Gene detail

Detailed information of Sda_chr02g01530.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr02g01530.1	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	Sda_Chr2	130120901	130133822	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr02g01530.1

ATGGTGGCAGCTTTATCCAATTCTAACTATATATACGACCATGAATTGCAGCGACACAGCATGGATCGATCACTGGTAATCACCAATAACCTTCCTTTTGTAACAGAAATAGAATTGCATAGGTCCACAATTTCCACAAATTATTCGCCTGAAGGACAGCGAAAACAGGAGCAGGTAGACCAACTAAGACAGGAGTTTGCTAGTAACAAATACCCAAGTCGCAAAAGAAGGGAAGAGATAGCCACCGAGCTGGGTGTCACGGAGAAGTATGTCGATCAATGGTTCCTGAAGCAACGCAATGGACGAATAGGGTCGACTACGCTGAAGATCGAGGCAGATCAAGTTGGTGAACTGGAGAAGCATTTCTCGGCGGAAAAATTTCCCAGTTTCCTCGAAAGAACGAAGATGGCGACTACTCTGGCTATAGCAGAACCAATGATCCGCACGTGGTTCCGGAAAAGGCGAAAGACACTGTTAAACGAGGAAGGAGAACGACCCAAGAAAACGCGAAAGATAACGCCGCCTACTCGGGTGAAGGTGACAGCGATGGAGGAACATGACCTTCTAGAGGAGGCTTTCAGTTCCAACCAGCACCCGAACGAATTCAAAATAGAGGAACTGGCCGAAAAGCTCGGTCTCTCCGAGAAACAAGTCAAACTGTGGTTTCAGTATCGGCGTTTAAAATCTTCTAAAGAGCGGATCCAGAAAAATACCGATAGTCAGAGCGGTGATGATGCTCTGCGTCCACGACCGACAAAGCACCCGAGAGCCAGTTCGTCGGAGCGGGGACAGGATATGGAACATATATCATCGGAAGTCTCGACTAGTCCAGCATCCTTACAATCATCTGTTGATGGTGACGAACGACGCGACGATTTTGAATCGCTCGTTTCTTTAAACGAGAAATGTGAAATTCCGAAGATAAAGAGAGATCCTGTCGAATATTGGAAATTCTTGGAAAAATTCAAAGATGCCGACGGGGAATTCGCGTGTTTTGTCTGCTCTTTGAAATGTATCTCAACTGCGGCATTAAGAGCTCATCTTCGGATTCATAAAGGAGTCCCTCTGACATGCCCAGAATGTTCCAGTACACACGTGAATCTCGGCGCGCTTGCTTGCCATATGAATCGCCACGAGAAGCGCCGTTGTAGGAACTGTGCAACGATTTTCAGGGACCGTGAAGAGTTCGCTGACCACGTGCCGCGTTGCCAAGAAAATAAATGCGACAAGGTTCCCAAACCGCACGTGCAGGCGTATTCCAGGTTTAAAAATTCTGACGGATTATACGCCTGTTTTATATGTTTGGATGTTTTAGTGACCCCGACATCCTTTGACAGTCATCTCCGTTCCATTCATTCAGGACTTACTCTGCAATGTCCGGAATGTGATGAAACATGTAAGGACAGCCAAGAATTCCGCACCCACTTGTTTATGGATCATTACAAGCGCGATTGTCCAACATGTCCGAGAACGTTCACCAAGCACAAGCAATTCCTTTACCATAGTCGACATTGTCGTAATAAAGCATCAATACGCGAACACTCTGAAAGTCAAAACTCGAATGACAGCAATGAATCTCATCTATGTGATCTGTGTGGGGAGGTATTCACATGCGGTCCGCTTTTTCATGTGCATCGTGCTAAATGTCGTAAAACTATGGGAAAATCGAGCGTCTTAGTTCGACCGTGGCCATGTAGCTACTGTTCGCATGTAGCTAAGTACAAAGTGGCGCTTGAACACCACGTGCTCATACACACAGGAACTAAAGACTTCTTGTGTGACGTATGTGGCCTGGCGTTCCGCCAGAAGGTGGCGCTGTGGCGTCATATGAAGATTCACACGAAGGACGTTCGTTATTCATGTGAGCTGTGTGACCTGAGCTTCATCCAGAAATGTTCTTTGGCCAGACATATCAAGACTCAGGGTCATGCGAAAAATGTGAGCAAGAAAATGCACGACCAAACTGTTTCGATGATGTGTGCCAATATGCAATAG

Transcript

Sda_chr02g01530.1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050752	Family	C2H2-type zinc-finger domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24384	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-