Gene detail

Detailed information of Sda_chr02g00190.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr02g00190.1	PROTEIN CBG26694	Sda_Chr2	17117489	17121045	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr02g00190.1

ATGCCTGCGGGCATCATTGCGTTTTCAAACACTGATCACCACAACCAGTCCTGGTGTGATTTCCAAACACACTTCGAAATCTGTGCCGAGATAAATGATTGGACATATAGGGAGAGAGGCATGCACCTGGCTGTCTCATTGAGAGGCCAGGCGCAGGGTGTCCTTGGCAACCTAAAAGGTAGGGATGCCAGGGACTACCATATGTTATGGCAGGCATTAGAGGAGAGGTTTTTGCCACCAAATCAGTGCGAGTTGTACAGGGTGCAGTTGAAGGGCAGACGCCAGAGAGCTGGCGAAAGTCTGCCCGAGCTTGGACAGGACGTCCAGCGCCTAACTAGGTTGGCCCACCCAACTGCACCCCAGGATGTGTGTAATATACTTGCTAAGGAGCAATTTATAGATGCACTTCGAGAGTCCGACATCCGATTAAAAGTAAAACAGGCTCGTTCTGAGAGCTTAAACGAGGCTATCAGGAATGCGGTGGAATTAGAGGCCTTTTCTAAGGCAGATGACCACAAATCCGGGTCTAAAGGGTACATTAGACCTGTGAACAAAATAAATCGACCAGTTAGTCAGTCGAATGATGAGAGGTTTGATGAGATTGGGAGAGAACTAAGAATGATTAAGAAATCCATGGAAAAGTCAGTGGAAGATATTAAGGCATCGGTTAAGAGTTTGATAACAGAAGTGACACTGCTGAAAACCGAAAACAGTAGACGCATGTGCACCACTCCACCAACTCAGTCGACAGGTTGGAGACCTCCCTTTCAGTCATTTGGTCCTAGACACCAAGGACCACAGCAAACTTGGAGACTGCCTTGGCGACCCCCAGTTCCAAGAGTGCCCACACCAATGCAACCTCTCTCTCCATTCTCCAAAGAGAAAGGCAAAGGTGCTAGTCACCCTAATTATAACCCCAATAGCAACTTTAGCCAAGGGAGGAACCACGACCGAGTAAGTCAGGCCATACAAAATTCGGTTTATGTGTCTCTCCGAAACCCGTCTGAAACAGGACTCTACATACCTGCAGACATAAATGGGGTAGCCACAGAGCTTCTGGTAGACACTGGTGCTACGGTGACTCTCATTTCGAAACCGTTGTTTGATAAAATTAAGGAGAGGAGGCTAACACCCTTGATCCCCTATGATCAGAAGGCACTCTCTGCATCTGGGGACCTCATGAAAATCCATGGCAAGGTCAGGCTTATGATCAAAATTGGAAAATTTGAGGTTGAGCACGATGCCCTTGTCTCTGACGTTCTGAAAATTGATGGAATGTTAGGAATGGATGTCATGATGAGCTCGAAGAGCACAATTAGCCTTCCCAACCTTATCCTTAATCTAGAAGGGCAAGACAACCACCTTTCCTTGGTAAACTTGGATAGTTGTTATCGGGTGACAGTTAAGGAGTTGGTAATCTTACCACCTAGAAGTGAGACCATCCCTTATGGACGAGAGGGACTCGTCGAACCACATGGAATATTTCTCGAGTCAGAAAAGGGACTCATTGGAAGAACCGTAGTGACTGTGGAAGATGATGTGCCAGTCCAGATAATGAACGTGTCTGACACCACCCACACCGTTTACCCAAAAACAATGGTTGGGAGTTTAAGTACAGTTCATTACATCGAAGAATGTCATGACCTGACAACAGAATTGCTACCTAGTCATCTGAACGAGTTGTACACCGAGTCAAAGTCGGTCATGAACGTTGAACAGGCTGACAAACTTAAACAATTATTGATTAAATACCAGAATCTCTTCTCCAAGGGTGATGGAGACATAGGGTGTACAGACATAGTTGAACACACCATAAACACCAATAATGCACCTCCTAAAAAGGAACCAACCCGAAGGTTTCCCATTCATATAAGGCAAGAAATGGAGAATCAGATACACGACATGTTAGAACGAGGTGTAATTGAACGAAGTACTAGTCCTTGGGCTGCTGGAGTAGTCTTAGTGAAGAAGAGGGATGAGAGTGTCAGGTTTTGTGTAGACTATAGCCGTTTGAATAATCTCACTACTAAGGATGCTTACCCACTTCCTAGGATTGACTTCTCTCTTGACCATTTGGCAGGTGCTCAGTGGTTCTCTACGTTGGACTTAGCTTCTGGATTTTGGCAAGTCAAGTTGGATGAATCAGACAAAATGAAAACAGCTTTTGCCACTACACAGGGACTTTTCCATTTTAGAGTTATGCCTTTTGGTTTGTGCAACGCCCCTGCTACGTTTGAGCGACTCATGGAGACAGTCCTCGCAGGACTTCAATGGGAAGTCTGTCTCATATATATGGAAGACGTCATAGTGATGACAAAGACCATAGAGGAGATGTTGACTAACTTAGACACAGTTTTCACAAGAATTCAGGGAGCTGGCATGAAGCTTAAACCTAGAAAATGCACCCTATTTTCACAAAGTGTAGATGACCTCGGTCATGTGGTGAGCAACCATGGTGTGTCCACAGACCCTCGGAAAATCGAGGCAGTAAAACAGTGGAAAACACCGACTAGTGTAACCGAGGTTAGGTCATTTGTTGGATTATGTAGTTATTACCGGAAATGTATACAGGACTTTGCTGCAATCGCTAAACCTCTGCATAGTTTAACCAAAAAGGGTACTATCTTTCACTGGACAGACGATTGCACTGAGGCAATTGTCACCCTACGTGATGCTTTAGTAAAGTCGCCAATACTTTCTCACCCTGACTTTTCTAAACCTTTTATCCTAGACACTGATGCCAGTGGGACGGCTATAGGAGGGGTGTTGTCTCAGATACTCAATGGTAATGAACATGTGATAGCATATGCGAGTCGCACCCTATCAAAAGCAGAGAGGAACTTTTGTGTAACCCGTCGCGAGCTCCTGGCAGTTGTCTATTTCACGAAACACTTCCATCACTACCTCTATGGAAGGAAGTTTACAATTAGGACAGACCACAGTTCTTTGCGCTGGCTTCTCAACTTCAAAAACCCCCAGGACCAGATGGCAAGGTGGATCAATATTCTGGCGAACTATGACATGGAGATTGTCCATAGACCTGGGACTCAGCACCAAAATGATGATGCTCTCAGTAGATCACCATGTGACCAATGTGGTTATGATCCAGATTGGGAAGATGAAGATGCACATGTTGAGTTTGTAGCATCTGTCCTTCTTGGACCTGTGGGTATGAGTGACATTGGGTTGTCTCTCACAGAAGCCCAGAAAAACACCCCTGAAGTTGTTAAGGTAAGGGAGTGGGTAGAAGCCGGGTCGAAGCCTGCTGCGAGTGAAATTACAGAAGAAGGTATATTTCTCAAAACACTGTGGTCCCAATTTGGGGTCCTATGTGTAATGGAGAACAGACTCTGTAGAAGAGTTCTCCATAATGATTCCCCAGACACCTACCAAACGGTAGTCCCCTGGAACCTGAGAAGAGCAGTGTTGGTCTATGCCCACGACACCAGGACAGCTGGCCACCTAGGCACAAATAAGACTCTTGAGAGATTACGCCGGAGCTATTACTGGCCCGTTTACAGAGAGACGTAA

Transcript

Sda_chr02g00190.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13650	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR034122	Domain	Retropepsin-like domain, bacterial	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-