Gene detail

Detailed information of Sda_chr01g00831.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr01g00831.1	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Sda_Chr1	63962195	63965521	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr01g00831.1

ATGTCTACACTTCTGTTCCGGCCGCGCCTCCGCCTTTTGTTCGGCGTGTCAGTCATGAATTCTACAGAGGTCAAGGGCAGATCAGTGGTTCCTACAAGAACTTCCACCAGAGACAACCACGGTCATCAGATCAGTGCCGAGCGTGTCTTGGTTTCGGCCATTGGAGGGCGGGATGCCCACTCCTTGCAGCGGGACGTGAAGGTTACACCACAAGCGGGAACCAAGAACCCTCTCAGCAAAAAATGTAGAGCACAAGAATCATTAAAAGATGAGTATGGTAATCTTTCACATATCACTGCTCATGAGGAATTTTTCTCCAGTCACTGTATCCCAGTTCTAAATTCAATAAAAGGGCGTCTCAAAAGACATTTACACTTTTGGCAATCGTTGGATTCTATTTCAGCTTTTGAGCTTGATATTTTAGAGCATGGCTACAAAATACCTTTTCGATCAACACCCAATCATACTCTTTTGAAAAACAATGCTTCTGCTTTGAGCCACAGTCAATTTGTTGAAACAGAGATTAGCTCACTGCTCACAAAAGGCTGTATAGTAAAAACTCCTTTCATTCCCCATGTAGTTAATCCGTTAACCGTTTCAGTAAACAAATCTGGCAAATGCAGATTAATTTTGGATCTCAGATCAGTCAATTTGCACGTATGGAAACAGAGTATGGTTTACGAAGATCATAAATTTGCATTGGATTTGGTGGAAGATCAAGCTTTTATGGTTAAATTTGATCTTCACAGTTCATATCATCACATTGACATACACCCAGCTCATCAATCTTTCTTGGGTTTTGCCTGGAATTTCCAGGGTCGTGTTCATTATTATTGTTTCAGTGTTTTACCATTCGGATTGACCTCCGCTGGATTTATATTTACCAAATGCATGCGACCACTGGTAAAACTTTGGCGTAGTCAGGGTATAAAGGCTCTGTTATACCTAGATGATGGGTGGATTACAAATGATTCGTACGAGTCTTGCAAGTCAAATGCCGCATTTGTTCAAATTTCTTTGGAGAAAGCCGGTTTGTTAATAAATCATGACAAATCCTGTTTTGAACCTTCCAAATCTATTGAGTGGTTAGGCTTGCAGTGGAACACTGACAGCGGTTTTTTATCTTTACCCCAGAAAAAACTGGAAAAGATCACAGAGTTAATTAGCCGGGGTATCGAAACTCATGCTTATTTAACTGCTCGGTCCCTGGCAAAAATTGTGGGCAATATAATAAGTTGCACGCCAGTCATTGGCACTCTAGCAAATCTCAAAACAAAATTTTGTTCCATGGAAATAGCCTGTTCTTTATCTTGGGATTCCAGTCTACGGCTGGCATCGGTAGACGAATGCGTGGACGAACTTAGGTTTTGGCAAGTAAACTTGAGTCGTTTGAACGCTCGTGCATTGTTTACCCAAAGTCTGTGTTTGGCCACCATCTTTTGCGATGCCAGCGCGTCGGGGTGTGGTGGTTTCTTAGATGGCGAAGTCAAACAAGAATTCCACCGCGATTGGAAGTCAGATGAGATATCAACGAGTTCCACCTGGAGGGAGCTCAAAGCAGTTGAGTATGGCTTCATCTGTTCGAAAGAAAAACTTCGAGGGTGCCGTGTTAAATGGTATTCAGACAGTAAAAACACTGTTTCCATTTGCAAAAATGGCAGCATGAAACTACATTTACATACATTGGCAGTTAATATCTTTAACATATGTGCAGAACATGGCATACATTTAGAAATTCAATGGATTCCACGGGAATTAAATACGGCAGCAGATGACATCAGCAAATTTATTGATGTCGACGATTGGAGGATTTCTTCCGAAGGTTTTCACTATTTAGATGACATCTGGGGTTCATTCACAGTCGATCGTTTTGCTAGTGCTGAAAATAGTCTGCTGCCCCGTTTCAATTCCTTATTCTGGGATCCAGGCACAGAAGCCACAGATGCTTATTCTCAAAATTGGAGTGGCGAAAATAACTGGGTAGTGCCGCCTGTCGCACAAATTCCAAGAGTCATTAAACATATTCAGGAATGTACGGCTCACGGCACATTATTATTACCCAAATGGCCTTCTGCTGTGTTTTGGCCGTTGAATTTTCCAAAACCACATCACAAAGCAAAATTCATTTTGGAAATCAGAGAATCAGAAGATTTTTCGAATGGGGGGGAACACAAAATGTATTTTCAATCCGGGAAAATTCAGAGGGTCTATGTTGGCTCTAAAATCTGGCGTTTGGACACGATTAGGGGAGTATACACATCCGACTTTGAAGGGTTTAGCGGCGAAGTTGCCTGTCACGCTCATGAAGTCCTCTTCGGACAACATGTGCCACAGTTATCTGAATTCTTTCCAGTCTTGGGTAGATTGGGCTGTCAAACATCATCTTCAACCGTTCCCGGCTTGCGAAACTGA

Transcript

Sda_chr01g00831.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF05869	Dam	DNA N-6-adenine-methyltransferase (Dam)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR008593	Family	DNA N-6-adenine-methyltransferase	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052055	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0009007	Molecular Function	site-specific DNA-methyltransferase (adenine-specific) activity	Interproscan
GO:0009307	Biological Process	DNA restriction-modification system	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-