Gene detail

Detailed information of Sda_chr01g00711.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr01g00711.1	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D	Sda_Chr1	52806409	52937147	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr01g00711.1

ATGCTCAATCTTCTCTCTTGGAAAAACGTAAAATCACTGCCCAAAAAGGCACTAGATGATGTATGTAAGCGCGAAGGCGTGCAGTTGAATGTTGGACGGTCAGCACAGGAAATACTTTTGTGTCATAAACTAGGAACTTCTACCGTTGGAGCTGCAAATTCGTCAAATACATTGACAATCGGGAACGTAGCAAAAACAGATGGAGGACTGGATAACGCTACATATTTCCTCTCCGACCAAGAGGTTTCAGAACTGAAAAGTCTTAAACCAGATTTCGTGAAAGTTATGGATGGCTGGACGACGGATATTTCAAAATTGCCAGAAATTGACATAACACAAGTTAAAAAGTATCTGCTTGGTGGTAACAGACAGGAATTTTCGGAAAATGGTCTAAGAAAATACAAGTTGACAAGAAGTTATGCACACATAAAGTCGGGCCACCTTCATTCTGTTCGCTTCAATGTCAACACCAACAGCAAGATGTTCTGTCTTCTATCTGGACAATGTTTGCCCTCACAATCTACAGACAGCAAGCAAGTGAAGTGGTGTCATGTCATCCTCGACAAATGTACAGGGAAACCCTATGTGCAGGCTGGACAAACGTGTTCCCACATTGGTACTCTCCTGTTCCTTGCTGCTGAAGTTGTGGCTGATGGTTTGGACGAATTACCAGATGGACCCTCATGTACTGAAATTCCTTGTCAATGGGCTGATCCAAAAGCGGCTAAGGTTCAACCAGCTCCAATAGAGGATGTGCAGATGACTGATAAAAAAGATGCGAACAGCAGATTGTCATCTGTCAAGCATGTACGGTACCAGCTAAAGGATATGATACATCAATGGGGGATGTACAACAGGGTTCTACAGCTGAGACATGATATTTTGAATGGGAATATCAACATGCCACAACCACCTATCATTCACTTATTGGACCCAAAAAGATTTCGCCGACATCCAGTACCATCTGTATTACCACCAATGACTCTTCCTGACCATGCTACGGACATGAATTCTGATCTTGCCCATTGTATGGAAGTGGAAATAGAGACAACACCTCTTCCTATACCAAGCATGCCACACAAAGTGTTCAAAGCATGTAGCGATGCTGGTTATTTGAGCGAGAAAATCCGGTTCATTAATTCATGCAAGCTGTCCAATGCCAATCGAAAAAAAAATTCAGAACTGACAGTCGGACAAAGAGAAGTTTCTGAATGGCAGGAACAAAGGTGTGGTGCGATTACATCTACCAAGTTCAAACGTGTTGTTTCCTACCTGAACAATATGAAGGCATCACCTGATAAGATAGTTGCATCTGTGATGGGTTACGAATCAACAAACATTAAAACAAAGGCGATGAAATGGGGGATAGATAATGAGCCAGAAGCAATTAAACAGTTAAACAGTCTCAGCAATGAGAGAGAAGAACCACCCCCTCCAAGTCAGCCAGATACACCCGACACAGGGCAAGTGATCCAGAGGTGTGTGATAATCCAACGAGACGAGAAAGGATATGGATTAACAGTGAGCGGGGATAATCCAGTATTTGTGCAGTCCGTCAAAACAGATGGGGCTGCATCAAGAGCAGGCGTGCAACAAGGTGACAAGATTATCAAGGTCAATGGAACTCTGGTAACTTCCTCAAATCACTTGGAAGTTGTTAAATTGATTAAATCCGGGTCTTTTGTGGCACTTACGCTGCTGGGAAAGCCTTCACATTCTACAACGCCATCAAATCGTCACTCCATTCACTTATCATCATCATTAACTGCTGAGCCTACTAAGGTCACGAGTCCACTGCCTGTAGATGCCGAGAAAGATCGGGAGTTAAAACAACAAAAGGTGCATACGTTGCGTGCTATGTATGAGCAAGCATTTTATGACTATGAGAAATTAAAAAAGAATTATATAAAGAACCAAACAGAGAAACTGCATACGTTACTCCTCGAGAAAGAGAAGACCGTTAAAACTTTGGAGAATCAACTAAAGAATTTGACTGGTACTCTTCCGGAGGTTTCATCTTCGATGGCTTCGGTGTCGAGCAGTGACCCTGACCAGCCGCAGGATTTACCTGGAAATGTCTCGTGGGTAAGTAATCGGCCACCTATAAGGCATGCAAAACAGAGGTCTGTTCCATCGTCATTGTATAGAACGTTTGAACAGCCTTCTGAGCCTCGGCCAACCAGTGTCTCAAGGTCGAAATCAGATGTGACTAATCCAAGGATTAATCCAGACGTACATCACAGTGGTCGGCGGACTGATGCTTCAGTAGAGGGTTCACTTCCGACTGTTATTTCCGATGGTTGCATTATAGCAGAGTCTCCGCCTACGTCACCTATACCCACACATACATTTAACGAAACAGACTGTGATAAAGAGCCTGATGCAACCAGACGTGACTCGGGTATCCCAGAGGATCCGAACCAGGTCTCTCAGAACATAATCCCTCCTAGCCAGGTTAATATAAACATCATATCAACGGAAGACGACGAATTCACTGATGAAGAATATGTAAAGACTGATTATTTTCCTGATCATTTATCTATAAAACGTGTCTTGGTTTTTCAGACTGAAGACCATGGTCCATTCAGTTCGATGGAGCAGCTAAAGGAGAAGCACGCTCATATGGCCATCTTTCTTCATTATCTCATATCCAACTGTGATCCCTCAGCCTTGTTCTTTTATATAGTATCTGATATATATAGTCATTCTCCCGGAAGTGCTAAAGAACTTCGCAAATGGGCCTATGAAATTCATTCCACATTTCTTGTACAAAACGCACATTTAAAAATCCATATCGACGACTCTGTAGTGGGTAAAATTGATGAAACACTATGTAAATATGATAAAGAAGACAACTTGCGGAAACTCTTCGATCATGCGAGAGAAACTGCGCTTGGCGACCTTGAAGCGTCACTGCGAGACTTTCGTCAGAAAAGTGACTTAGGGTTAGGAAACATCTTCGGCACGCATGAGCTGAAGGATAATATGGAAAAAAGTACGGAACTGAAAACTATAGAAAAATATCTAATTCCTCATCTGGAAACTTTCCATAGTGATGAAGAAGGGAGTAAGAAACCGCGTGAGCAAGCGATGGAATGGGCGCTGGCGACATTCCTCAAACACGTCGGCATCCAGAAGTCTTCTCAGACGAGTATTCTCGACAGAGCTCATAGCTTCGTCATGAAAGAGAAAAAACTCAAGCTACCTAGTGGCAAGCCAAGGCCAAGGTCTTCGAAGGGTCACCTGTTTCAGCAGCAGCATTATTATAATGTTACACTATGTATGCGATGTCATTCTATTATATGGGGCGTCGGCTACCAAGGCTTTCAGTGTTCACATTGTGAACACAATGTATGTAAATTTTGTATAGACGATGTCGAAGAAACATGTGGTGGTTCAGCGAAGAAAGGTCGGAAGAATCGGTCTTCAACTAACATCCGCGAATTCATTACACGCAAACCAAGCCATACAAACACTGCAGCAGTGAAAGAAGCCCTAGAGAAAGCTGACCATGTCACAAGTCCGATGCCAAATTCTAATATGACACAACCGCAGCCTTTACGAGAAGAAGGAGATGATGACCTCACCTCATTGAGGGAGGGTAAAGATGGTCACTCTGTCCAGGATCTTCTCAAGAGATATGAAGACGATAAAAAAGAAAAGAAAGGAGGCAAAAGTACCATCTTACTTTACAGTGATGTGGATGGAGACGAAAACGCTATAAGTAAAGTTTTGAACCAATCAGGCAGCTCATCAGCATCAAGTCTTTCAACTAGGAGTGTGGATAGTCCATGTAACTCAAGTGAGGCTGTGAATGAATTGACTAAAGACGATTCCGATTTCGATGTTGAAGCAGAGTTACCCACACTAGACTGTTTCTTAGATAAGGATGTCATGAAGAAACTGAAACCAAAAGAAAAGAAACGACAGGAAGTTCTAAATGAACTCTTCTATACAGAGAGAGCTCATGTTAGGAACCTAAAAATCATGGACAAGCTGTTCCACCAGCCGATGTCTCAGGACAACCACAAAGAGTGCAAGGATCTCGATAAAATGCTGTTCCCAAACCTTGACAAGCTGACCGAATGTCACTGTTCCTTAAACAATGATATGAAAGCCAGGCGGTTAGAAAATCCTGTTGTATCCGAGGTCGGCGATGTACTACTGAATCGGTATGATGGGGAAGCCGGTGAACAATTCCGAGTGTGTTGTGCCATATTCTGCCGTAACCAATCATATGCCTTAGAGGTGTTACGGGTAAAACAAAGGAAAGACCAGAGGGTGTCTCAGCTTCTCCAAGATGCTGAGAGCAGTCCTCTGTGTAAACGGTTACAGTTACGTGATATCATTCCTACTCAGATGCAGAGGTTAACGAAATATCGACTGCTCATAGAAAATCTACTCAAATATACCCAGGTCAATACTGACGAATATTCCAGACTAGAAAAGGCTTTCGATAGAGTGAAAAGTATCTTAGGGTATGTGAATCAGGCTGTGAAGGATTGTGAAAATAATCAGCGGTTGTTAGAATTACAGAAGCGAGTCGACAAACGTGCTATGGAAAATGTAGAAGAGGAGTATGCAAGAAAAATCGACTTCCGGAAACACAAGCTCGTGCACGAAGGCATGCTGGCTTGGAGGTTCGGCAGGAAGCAAATTGAACTTCAAGTTGTTTTGTTAGAGGAATTGTTAATTCTGTTACAAAAACAAGATGATAAACTTGTGTTAAAAAGTCAAAGTACGAACATTCAGCCAGGTCTCGACAACAGTCGATACACCCATATTCCAGTGCTACCCCTAAACACGTTACTCACAAAGAATAATGCTTCAGATAAAAGAGCTTTCTTCTTAGTCAGTACATCAAAAGCTGGTCCTCAGATTTATGAACTCGTAGCCAACTCTATAGGAGATAGAAACAAATGGTTTACAGAAATTAACAATGCTATAGATGTATATAAACAAAGAAAAATAACTGAAACTAAAAAGGAGGAGCCGGAGGAGATTATTGTTGAGGAGCGTGATAAGATTCAGATTGCACCAGGCAGCAGAAAGCAATCAACTCCAGAGCCTCCAGCTGAAATAAAGGAGGCTGAGGATCATAGTTACGAGAATGTCGAGGAGACGAATCAGGACGAGCCAGACCTGGTGCAGCCGGATTGTGTCATCATTTCAGATGTCACGATGGCGGATGCTGAGAGCGTACTATCGCCAATAGAAAAGATACGACGTCACGGTGACATTATTCGAGGCGACCTTCGACAGATGGAGCACCTAGTTGCAGACTATTTGAATATTTCACATCGTGAATACCTCGAATCTGCACAGGTTAGTGTAGATAAGT

Transcript

Sda_chr01g00711.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00130	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF00621	RhoGEF	RhoGEF domain	Domain	Interproscan
PF09128	RGS-like	Regulator of G protein signalling-like domain	Domain	Interproscan
PF17838	PH_16	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219	Domain	Dbl homology (DH) domain	Interproscan
IPR001331	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR002219	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR015212	Domain	Regulator of G protein signalling-like domain	Interproscan
IPR016137	Domain	RGS domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR035899	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036305	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR041020	Domain	ARHGEF1-like, PH domain	Interproscan
IPR044926	Homologous_superfamily	RGS, subdomain 2	Interproscan
IPR046349	Homologous_superfamily	C1-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45872	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001664	Molecular Function	G protein-coupled receptor binding	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-