Gene detail

Detailed information of Sda_chr01g00550.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr01g00550.1	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Sda_Chr1	43465742	43467793	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr01g00550.1

ATGGATTTTCCCAATGGAGAAAATTTATTACATTTGAAACTCAACGCGATTCAATATCTTGACAAAATAAATGGCATAGTGGATATTGAAGAATCGATTGCTCTACAAACGAAGACTCAACATTGTGTAGTGTTCACATTTCCGATTTGGATAGATCCAGCCAAACTTTCAGACATTGATACTGTTCTAGGTAACCTGGTTCTGAACGATCCTGTAACGTGTACACGGATCTTCCAACATGTGGTGTGTGACATAATACAGAATAAGAATTTGCATCCTGAAATTAGTGATATTGCTCCATCGCAGATTTCTGTTGTGTTTAAGTTTACCAGTCTACCAGCTCATGGTGGATTTTACTCTTTAACTGGTTTACATGATTTATATTTAAAATCCAATGATACTAAACTAGTTGAGCTCTCTGGAATAATCATCGGATTGACAGCTATATCCAAATACACACAAAGCACACGATATCTTTGTCCAAATGATTTTTGTGCTGGCCATATTGGAAATAATTTCATCAGGATACATATCCCCGGTGCATCAGAAGCTGACATCGTACGGAAGGACTTTTGTTGTCCACACTGTAAAGCGGTTTTGCAAGAAGACAGCAGTTGCAGAGCGATAGCAGATAGACTAATAGCAGATTTAGTACCCACCGGCTGTTTTAAGAGCATTACTATGGACACATTTAAGATTCAGGCCATTTCTGTGTACTTCAGAGGCAGTCTGACAAATACTATCCATATTGGGAAGAAATGTGCTCTTGTTGGATATATCAAGAAAGACATAATTGACGACAATATATCAATGTCTATTGAAGCTAATCATCTGCTTGATCCACCACTCTACAAGTTGGTTAACAGTGAACCGTATTTGCCGCAATCGATTGCTAACTTGTACGAGGATAGGAAGTCGTCACCATGGAGCTTTGTGCTGACATTGGCATACCTATTCGGATGCAACATTACACCAAAAGGAACATTTTTCAAGTTGAGACTTGGCCTGCTTATGTGCATTATTTCTTCGATGGATACTGATAAAATGAGTCAGAATTTAATGCATTTACTGGCAATTGGTCGCGAGACATCATTGTTGAATCGCTTGATGGTGTACAGTCAGAAATTTGTTCACAGGACTGTTAGACATAATTCAGAATCGCATCTAACTGCGAAAGTCCTACATGACAAATACAAAACAGCTGCATATTTCATTGAAGGTGGATCATTGTCACTGGCTGAAGATGGTGTTTGCTATATTGGGGACTTGGGTAGATTGAAGAAATCTGCATTAGAGCAACTTAAAAGTACGCTGACGAATAGAAAGGCTGTGGTCGACATCGCATCGAAGTTCACTGGAGGTTTACCACAACAGTTTACTTATAGGCTATCATCTCAAGTTTGGATGTACTCCGATTCGTTAGTGCAAAAGAAGGCCCAACATTTTGATGATATTTATTCAAATCTTGATGTAGGAGATGTGTCAAGGTCAATAATAGATGCTGTGGGCATGGTGTATATGACAGATACGACAGATACAATTAATGCCGAGCTACTGGACAGTCACTTGACAGAGTTCGCACTTACATCAGCATACATACCCGATTCACCTAATGTTATCACAGATGAAGATTTCTCTAAGTACTTCAAGTATGCATGTGGTATAAATCCAGTGCAAACGAAGAAAAGCGAAGAGCTTCTCAATTCATACTACCTCTCCATCAGGAAATCAAGATCAGACAGTATGGGATCAACAATCATACCCGTCTCTGCTTTGAATAGCTTGGTGAATATGGCTTGTGCAATTGCCAAGCTGTCTTTAAGAAGCGAAGTGACAGTAAATGATGCCATAATGGCAGTGAGAATATATGAAGAAAGCCTGACAGCCAGACTGGGTTTCTCTGTACTTAGCATCTTACCTGAACCCCATGCGATTGGACGCAATTTGGATGACATTTTTGGCATAGAGAACGACAGATTCATGAAGCAGTTTTACGGAAAGGTGATCAGATTCTGTTCAAGTGCGACAAATGAAGCTTTTCCAGAAGAGTAA

Transcript

Sda_chr01g00550.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00493	MCM	MCM P-loop domain	Domain	Interproscan
PF17855	MCM_lid	MCM AAA-lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001208	Domain	MCM domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031327	Family	Mini-chromosome maintenance protein	Interproscan
IPR041562	Domain	MCM, AAA-lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000727	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0017116	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-