Gene detail

Detailed information of Sda_chr01g00256.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr01g00256.1	DNA POLYMERASE	Sda_Chr1	24105014	24112188	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr01g00256.1

ATGGCTGAAGAAATAATGACACCTCTAACAGTGGATGAAATTTATGAAATAGAATGTATTCTGCAAGACATCGAAGAATACGACAAGGCTATCGTAGCTTATCAACTGGATGAAGATATAATTGAAGCATCTAAGCTTTGTTCAGGAGATGATCCATGGCCGAACCAAATCGGATACGGAGAAGATGATGCGCCTAAAAATGATGTTAACAACTCACAACCCGGTACAGCTGGACCATCAGGATTACAAAACCGAGAAGACGAACAGACACATCATCAAGATGAAGCCGTAAAATCAGACAATCAAACAGCCGACAGTTCTGATATTCAAATAACTGGATATAGCATTCGCAAAAGGAGTGAACGAATCTTCGGAAACAATTTGGCAACACAGAGAACATATGAGATCAAATTAGATGAAATTTACAAAGAGAAAAAGTTAATCGACATATACAGGAATCTACATTCAATGTTCGAGGACACTATTCAAAGAGCTCGTGGAAATTTGGCTGACAATGATCTTGGCAGAGTTATCATTCACCATGAGAGTTTGGACAACCCTATAGTAGTTCCGTTACAAACGTTGCAAACGTTAAATGCTAACACTGTGATTGACAGAATCGAACTCGTTTTGAACAGCAATCAAACACTGACTGTCAATCAAAGTTTCCACATAGATATAGGCACCATCGAGTTACCTAAAGGCGGAGCACGGAGGAAGATAACGGCTTTACATGATGAAAGTGACAATCTAAGAAATAAAACATCGATCGTTACGATTGAAAATACCGACAATATGTGTATGGCTCGGGCTATCGCCGCATGTTGGTGTAAATTAAATATTTGCAGTCCTGATGAATGGCTGGAAATAACACAGAATAGAGGAACCAGAAATAATTTACAACTCATCATGGAATACAGAAAAGTACCGAGCAATTATTACAAACATATGAGGAACAAAAAACGCACGGAGCAAGGAAAATTAGCCAAAGCAATTAGTGTCATCGCAGGTGTATCAACAGACAGACCGGCCAGTTTAGCAGATCTAAAAGCATTCGAGGACACTCTGAATTTGACAATACTAGTCGTCAGTGCTAGACTGGGTAATAAATTCATTACCAGCGCGCCTACAGACGGTATAGAAAGACCCGTGATATATTTATATCTCACTGCTAATGAACATTTCCACGCTATACAATCCATAACGGGATTCTTTAGCGCAATATATTTCTGTGTGCATTGTTTAAAACATTATTCACACAAAGGAAATCATTATTGTGAACACACCTGTTTCGTGTGTAAAAGTGATAAATGTGGACAAAGTGAAAACAAAGAACATTGTTCAGATTGTAATATGACGTGTATGTCTCATCAATGTTTTGTGCGTCATAAAGCAAAACCTATTAATCAAGCTTCGGGAGAAACTACAGCGCCTTGTCAAATATGGTGGAAATGCTTGGACTGTACAAAAGTCATGGAGAGACGGAAAAGACGTCCGAATCAACACGTGTGCGGAGAAACATTTTGTAGATCGTGTGACAAATACACAATGGGACCACACGAATGCTATGTGAGGGCCATACCTCCCGTTACTGATGATGAAAGAGCTAAATTCTGTTTCTTCGACTTCGAAACCATTCAACATGATATATTGGAATGTTCTGAAGGATATGCACCTTTACATACAAAGGATTGCCAGGACTGTAAAGAGGATCATATATGCAAGAAATGTGCTAAGTGTCAGCTTGCTACAGAATGCATGCATGAATCGTTGGAAGTGAAACCGAACTGTAGAAATTGCGGACCTCTATGTGATGCGTGTATCGACAGTGATGACAAGAAGAAGAAAAAGAAGAGTGACCGAAATTTATGTTCGGATACATGCGGACTCCGAGAGGTTATATTTAGCGGTCCTGATACCGGTGAAAAGTTTGGAAAATGGTTATTCTCGGAACAACACAAAGGGTTCATAGCACTGGCTCACAACTTCAAGGGTTACGATGGATATTTTCTCATGGAATATCTCATTGATCAATCATTGAGACCCAAAGTTATATATAATGGATCCAAATTGATGTACCTATATGTGGAAAAAGATCTTCATATCAAAGTACTGGACAGTCTCAGCTTTCTACCAATGAAGTTGGCACTGTTACCGAAAACTTTCGGTCTGGATGGCGAGAAAAAAGGATGGTTCCCGCACTTTTTCAATAAATCAGCCAACCAGAATTATGAAGGACCCTATCCGGATGCCAAATATTACGGCGCTGATTATATGAGTGTGACTGAACGAAAAGACTTCACGAAATGGCACGCTGCTCAAACAAATGCAGTTTTCATCTTCAAGAAAGAATTATCGGATTATTGTCGTAGTGATGTCAATATTTTGAGACAAGCTTGCATAAAATTCAGAACCCACATCATGAATGCGACTGGAAATATACAACCCGTAATTGACGAGTTTTCTGGCGATATGAAGTTCAAACTGGTCGGTGCGGTTGATCCATTCCAATACGTTACAATCGCATCGGTATGTATGGGTATATTCAGAACGAAATTCGTCGACGAGGAATGGAGAGTGCGTCTAAGTACTGAAGGGAAAACGTGGCTTCCTGCTAAATGTAAAGATGGAACCTTGTCTATTTTATACAAAGGTGAATGGGTTCAAGACACAAAACTTCAAGATGAACGCGGCGTCCAAATTCGTGAGAAAGAATTTCTCAAATCCCAGATAGCTCGAATCCCCAAGACATCGTATAAAGATCAATACAGCAAAAGTTCTATTCAATGGCTGGAATGGCTGATGTTCAAAGACAAAGTTCACATAACTCACGCATTGAACGGCCGTGAAAAGAAACTCAATGATGCAAAGTACAGATTGGATGGTTATTGCGAAGAATTAAACACGGCATTCGAATTTCACGGCTGTCAATTCCATGGATGTGAACTTTGTCTGAGTCACGACAGAGACATAGTCAAGAATCCGATAACCAACCAGACACCTAATGAATTATACGGACTCACACAGAAAAAGAAGAAGTTTATAGAAAGTCGAGGCATGAAATATGTGTGCATTTGGGAACACGAGTTCGTCGCTGCTCGAAAGACTAATCCGGAGCTTCGTGACTTCATCGCTAGTTTAGACATTGTTGAGCGGCTAGAGCCTAGAGACAGTTTCTTCGGCGGAAGAACGAATGCAACTAAATTACACTACAAAGCTGCCGTTGGTGAGAAAATACACTATTTTGATTTCACGTCGCTGTATCCAAGTGTGCTCAAATACTCTCGCTATCCGATTGGACACCCTAAAATCATTTTGGGCGATGACATTACCGAGCTTAAGGATTACTTCGGAATAGCGCAAGTCAAGATTTTACCACCTAATGGACTCTATCACCCCGTATTACCGTATCGATCCGAAGGTAAACTGAAGTTTCCACTGTGCAGGACTTGTGCTGATAATGAAAATCAACGACCTTGCACGTGTACGTGCCAACAGAGAGCCATTACCGGCGTTTGGTGTATTCCTGAACTGGAAACAGCTGTCAAAGTGGGATACAAGATTCTCAAAATATATGAAATATACCATTGGACCGAAACGTCAGACTATAGCCAACAAAATGGATTATTCACGGAATATATAAACACATTCCTAAAGTTCAAGCAGCAGGCTAGCGGTCCTCCGGATTGGATAAAATCTAACGAAGACATGGATAAATACATCACATCGTATAAAGACAACGAAGGTATATTACTGGACAGAGAAAGCATCGAAAAGAATCCAGGACTGAGGCAAATCAGCAAGCTCATGCTCAACTCATTTTGGGGGAAGCTAGGCCAAAACCAGAATTTCAAGCAGACCGAGTATTTCCATGAATCGGAACAAGACAATCTATTCCAGCTGATTTCAAATCCAATGAAACAAATGGAAAATTTTCATGTCATAACTGATGACATGCTTCAAATGGAGTGGACCTATCGAAAAGACTGTGTGCCTTGTGGAGCAGCGAATAACATATATTTGGCCACATTCACGACGTGTCACGCTCGATTAATGCTATATGAAGTTATTCATTCCTTGGACAGAAGAGTATTATATTACGACACGGATAGTTGTGTATTTAGCAGCACTGAGGATCAAATTAATCCCCCACTGGGCGACTATTTGGGCCAACTCACCAGCGAGCTAGATCCGGACGAATACATCGAAGAATTTGTTCAAAATAAAAAAACAATGACTGATCAACCCGATGTTGAAGGAAACCAACGGACTGAAACCAACGAGAGGGCGTTCCATCCACAATGCTTGGCCCCGTTAGGAAATGACATTTTCCTATTTGACGGCCGATTCCAGGGAAATCTGTATATACACATACGAGAGTGCGGTGAAAGTTCTGCGGGCCATAAATTTCCGACAAAATCTGGAATAACATTAAATCTAAGGAGATTCAAAGAGTTGAAATCTTACTTAGCAGATATACATCAAGAAGTGGTCAGTTATCGTACCGGTGAAGACGATGTATTCATGAGACGTCATATCGGAGGGAATTTCTTCATTACAATAAAGAGCGGCATCCCGCGTGTTGACATTCGCAGGTATTGGCTGCCTGAACATTCAGATGATTTGTGTGCAACCAAATACGGAATATCTCTGACATTCGACCAATTTGAAGAACTAGTTGGAGCTATATTCGTCCTGTGTGCTAATATTCCTGAAATTGATCAGACTGTGCAGTGCTATTTGACCGACGATCACCAAAACCAGGAAGGATCTTTAAGATGTATGGAATGCTGCCCCAACGGCGATAGAACGTGTTTGATTAACCGGATGCAGACATTGATCTAA

Transcript

Sda_chr01g00256.1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	PC4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02229	PC4	Transcriptional Coactivator p15 (PC4)	Domain	Interproscan
PF03175	DNA_pol_B_2	DNA polymerase type B, organellar and viral	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003173	Domain	Transcriptional coactivator p15 (PC4), C-terminal	Interproscan
IPR004868	Domain	DNA-directed DNA polymerase, family B, mitochondria/virus	Interproscan
IPR006172	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR009044	Homologous_superfamily	ssDNA-binding transcriptional regulator	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33568	DNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-