Gene detail

Detailed information of Sda_Sca01496.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_Sca01496.1	PEPTIDE CHAIN RELEASE FACTOR RF3	ptg000737l	1066619	1072087	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_Sca01496.1

ATGACAGATGTATTAAAAGCCTCACATAAAATCACAGAAACTGATGATGTGAAAAAAGCAGATATATTGCTAATTAATACTTGCTCTATTCGTGAAAAAGCACAAGAAAAACTATTTCATCAACTAGGTCGTTGGCGAAAATTAAAAGACAAAAACCCTGAGTTAATAATTGGAGTTGGTGGCTGTGTTGCCTCGCAAGAGGGTGATTTGATTTTTAAAAGAGCCCCTTATGTTGATATGGTTTTTGGTCCACAAACTTTGCATCGTTTACCAATTATGTTAAATAATGTTTTATCAAAAAAAAATAAACAAATTGATATTTCATTTCCAGAAATTGAAAAGTTTGATAATCTACCAAAAACACAAACTAATAAAATTAAAGCCTGTGTATCTATTATGGAAGGTTGTAGTAAATATTGCACATTCTGTGTTGTTCCTTATACTCGTGGCGATGAGATTAGTCGCCCTTTTAATGATGTTTTACAAGAGGTTGAAGAATTAGCAGAACAAGGGGTTAAAGAAGTTGATTTATTAGGGCAAAATGTCAATGCTTACCAAGGAATTATGTATGATGGAGAAGTAGCTGATTTAGCACTTTTAATTCATTTTGTTGCTAAAATTGATAAGATAAAAAGGATTCGTTTTACCACTTCACACCCAGTAGAGTTTTCTGAGAGTTTAATAGAAATTTATAAAGAAGTTCCTAAATTAGTATCACACTTACATCTTCCTGTGCAAAGTGGCTCTGATAGAATTCTAACAATGATGAAAAGAGGTTACACAACTTTAGAATATAAATCAAAATTAAGGAAATTAAAAGAGATTCGCCCAGATATATCATTTTCATCTGATTTTATTATCGGATTTCCATCAGAAACTGCAAAAGACTTTGAAAAGACCATAAAATTAATTAAAGAGATAGGATTTGATAAATCATTTAGTTTTATTTATTCAGCACGACCAGGCACACCAGCAGCAGTGTTTGATGATAATATTGATATAAATACTAAAAAACAAAGATTAAAAATAGTTCAAGAACTATTATTAGAATCAGAAAAAGCAATATCAAATGCAATGATTGGCAGTAAACAAGAGGTATTAGTTGAGGACAAACATTTGCAATGTATTGAGAAATCTTTGGATGTTGCTATTAATAATCGTGCTGAGAGTTTTCAAATAAAGGGTAAATGTGAAAAAATAGCAAAAGAAGTATTAGAAAAAATAGCAGGTTTGAGTTTAGAAAAGGAAATAAATCTCACTGATATTGAATTATTAATTAATCAAGTCAGTAATAAAACAATAACTGCTGAGAGTGTCAATATTCTAACTCGTAGAAAAACTATCAAAGTTAGTAGTGTTAATCAACAAAAATATATAAAAGCCATAGATAATAAAGACTGTGTTTTTGGTATTGGTCCTGCTGGTACTGGTAAGACATATCTAGCAGTGGCAAAAGCAGTTGAAGCACTAGAAAAATCATATGTTAGAAGAATAGTTTTAGTGCGACCAGCAGTTGAGGCTGGTGAGAAATTAGGCTTTTTACCAGGTGATTTAGCTGATAAGATTGATCCATATTTACGACCAGTTTATGATGCTTTATATGAGATGTTAGGTTATGAAAAAACCAATAAATTATTAGATAAACATATAATTGAAGTAGCTCCACTTGCCTTTATGCGTGGGCGAACTTTAAATGAATCATTTATTATTTTAGACGAAGCACAAAACACTACAAAAGAGCAAATGAAGATGTTTCTAACTAGATTAGGTTTTGGTTCGCAAATGGTTACTTCTTATAAATTACGAGGTAAGAGATTGTTTTTAATGGCACCAATTCATCATCATTTTGAGCAAAAAGATGCTGGTAAGACAACGATTACCGAGAAATTATTATTATTTAGTGGCACAATACAATCAGCAGGTAGTGTTAAAAGTCGCAAATCCAATCAATATGCCACATCTGATTGGATGGCAATGGAAAAAGAAAGAGGAATTTCAGTTACTTCAAGTGTGATGCAGTTTCCTTATGATGATTGTATTATAAATTTATTAGATACTCCAGGACATGAGGATTTTTCTGAAGATACTTATAGAACACTAACAGCAGTAGATTCAGCACTTATGGTAATTGATGTTGCAAAAGGTGTTGAGCAAAGAACTATTAAGCTAATGGATGTTTGTCGATTGAGAGATACACCAATTCTAACATTTATAAATAAATTAGATAGAGAGGGTAAAGAACCACTTGATTTATTAGATGAGATTGAGTCAATCCTAAATATTCAATGTGCACCAATAACTTGGCCAATAGGTATGGGTCGTGAGTTTAAAGGAGTTGTGCATTTACTGGAAGATAAAGTTTATCTATTTAATGCAGATGAAGAGCATAGTGTTAGTAATCAAATAATTATTGATGGTATAAATAATAAAGAATTATTAAATTATATGGATGAAGATGCTTTTAATAATATTAATGACGAAATTGAACTTGTACGAGATGCACTACATAAATTTGACTTAGAATCTTTTAATAAAGGTAAGCTAACCCCAGTATTTTTTGGCTCAGCAATTAATAATTTTGGTGTACAAACTCTGCTTGATGGTTTTGTTAAATATGCCCCAATACCTCAGCCAAGAGCTACAAATAATCGTATTATTAATGCTACCGAGGATAAATTTACAGGATTTGTTTTTAAGATTCAAGCGAATATGGATGCAAAACACCATGATAGAATTGCCTTTATGCGTATAGTTAGTGGAAAATATCAAAAGGGTTTAAAGATAAAACAAGTTCGCACAGTAAAAGATATAAAAATCGCCAATGCCATTACTTTTATGTCACAAAAAAGAGAGATAGTCGATGAGGCAGTTGCTGGTGATATTATCGGCATTTTTAATCATGGTGGTATTCGTATTGGTGATTCTTTCTCTCAAGGTGAGGATATTAAGTTTTCAGGGATTCCTAACTTTGCCCCAGAATTATTTCGCCTCGCTCAACTTAAAGACCCATTAAAAGCAAAAGCTCTACAAAAAGGTTTAGATCAATTATCAGAAGAGGGTGCAACTCAAGTTTTTAGGCCACTTAATAATTCACAGCAAATATTAGGAGCTTTAGGGATATTACAATTTGATGTGGTAGCCCATAGATTAAAGTATGAATACGGAGTTGATTGTATATTTGAGAGTATTAGTGTTAATACTATCAGGTGGGTTTTGGGTGATGATAAAGATATTGAAGTATTAAAAGCAAAAACATCCAATAACTTAGCAATTGATTCTGGTGGTAGTTTGGCATACCTTGCCCCAACTAGAGTTAATTTAGACTTAACAATTGAAAGATATAAGAACTTAGATTTTGTTGATACTCGTGAACATTAA

Transcript

Sda_Sca01496.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF00919	UPF0004	Uncharacterized protein family UPF0004	Family	Interproscan
PF02562	PhoH	PhoH-like protein	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF16658	RF3_C	Class II release factor RF3, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR003714	Domain	PhoH-like protein	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR004548	Family	Peptide chain release factor 3	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR005839	Family	Methylthiotransferase	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR013848	Domain	Methylthiotransferase, N-terminal	Interproscan
IPR020612	Conserved_site	Methylthiotransferase, conserved site	Interproscan
IPR023404	Homologous_superfamily	Radical SAM, alpha/beta horseshoe	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031157	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR032090	Domain	Peptide chain release factor 3, C-terminal	Interproscan
IPR035647	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR038135	Homologous_superfamily	Methylthiotransferase, N-terminal domain superfamily	Interproscan
IPR038467	Homologous_superfamily	Peptide chain release factor 3, domain III superfamily	Interproscan
IPR041732	Domain	Peptide chain release factor 3, GTP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43556	PEPTIDE CHAIN RELEASE FACTOR RF3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006400	Biological Process	tRNA modification	Interproscan
GO:0006415	Biological Process	translational termination	Interproscan
GO:0016150	Molecular Function	translation release factor activity, codon nonspecific	Interproscan
GO:0016740	Molecular Function	transferase activity	Interproscan
GO:0035596	Molecular Function	methylthiotransferase activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-