Gene detail

Detailed information of Sda_Sca01404.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_Sca01404.1	PYRUVATE CARBOXYLASE SUBUNIT A	ptg000737l	586636	593526	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_Sca01404.1

ATGGTATTTCAAAAACCAAATCCATTTCCTAAATCAATCTTTGATAATGTAGCTTATGGAGCAAAACTACATGGCATGGCTAAAGATAAAGATGATTTAGAGGAAATAGTTATAGATAGCTTAAAAAAAGCCAGCTTATTTGAAGAGGTAAAAGATCAATTACATAGTCCTGGGAATGGTCTCTCAGGAGGGCAACAACAAAGATTATGTATTGCTAGAGCGATTGCTATAAAACCAGAGGTTATTTTAATGGATGAGCCTTGTTCAGCATTAGATCCAATTGCCACAGCAAAAATTGAAGATTTGATGTTAGAATTAAAAGAAAAATATGCTATTATTATCGTTACTCACTCAATGCAACAAGCAGCAAGAGTATCAGAAAAAACAGCATTTTTTCATTTAGGAAAACTAATTGAGCTTGAAACAACTCTAGAAGCAAAAAATGTAAGTATCACAATAAATGATGCAGCGAGAAAATGGATAGCTAAAAAAGGCTATGATGACAAAATGGGTGCAAGACCAATGGCAAGACTAGTTGAAGAAGAAATATCCACTCCACTTGCTGATGAATTATTATTTGTAAAGAAGTTAATTGAATTATTAGAGAAGTCAGGTGTTTATGAGATTGAAATTAAAGAAGGTGATGATGCTGTTCGCATTTCTCGTGGTGGTGCTTCCAACCCTATAAGTACTCCTATTTATGCTCCAGCCCCTATTAATCCAGTTAACCCACAAGCGACATTAGATGATGCTGTTGAAATGAGTGGTCATGCTATAACTTCACCAATGGTTGGAACTTATTATTCATCAGCCTCTCCTGAAGCTAAACCTTTTATAACAATCGGACAAACTATTAATAAAGCAAATAGGGGTGAGATTGCTCTAAGAATCTTACGAGCCTGTAAAGAACTTGGCATTAAAACAGTTGCTGTTTACTCTACAGCAGATAGTGAATTACAACATGTCCGTCTTGCTGATGAGGCTGTATGTATTGGCTCTGCCTCATCAACTGATAGTTATCTAAATATCCCTGCGATTATTGCATCAGCAGAAGTAACTCATGCTGATGCTATTCATCCTGGTTATGGGTTTTTATCAGAAAGTGCCCAATTTGCTGATATTGTTGAAAAAAGTGGTTTTATTTTTATTGGTGCTAAAGCTGAAAATATCCGTGTTATGGGTGATAAAGTTGCAGCAATTTCTGCAATGCAAAAAGCTGGAGTCCCTTGTGTTCCTGGCTCTGATGGTGGTTTGGGAAATGATGATAAAAAAAATATTGCTATAGCTAATAAAATTGGTTTCCCAATTATTATTAAAGCCTCAGGTGGTGGTGGTGGTCGTGGAATGCGTGTTGTTGAAAAAGAAGAAGATTTAATAGATTCAATCGTATTAACTCAAACAGAAGCTAAAAACTTCTTTGGTAATCCTGAAGTTTATATGGAAAAATTTCTAACAACACCAAGACATATAGAATTTCAAGTATTATCAGATCAACATGGCTGTGCAATTCATTTAGGTGAGAGAGATTGCTCAATGCAGCGCCGACATCAAAAAGTTGTTGAAGAAGCACCAGCTGTTGGCATTAGTGAAGAAATACGAAATAAAATGGGTAAAGTTTGTGCAGATGCTTGTGTCAAAATAGATTATCGTGGAGCTGGAACTTTTGAATTTTTATATGAAAATGGTGAATTTTATTTTATTGAAATGAATACCAGAGTGCAAGTTGAACATCCTGTAACAGAGATGATTACTGGTGTTGATATTGTTAAACAACAAATCAAAATCTCACAAGGTGATAAGTTAACTTTGAAACAAAAAGATGTAGTTTTAAATGGTCATGCTATTGAATGTAGATTAAATGCTGAAGATCCAGATTCATTTATGCCTTCTCCAGGGAAAATTACTCAATATCATATGCCTGGTGGCTTAGGTGTGCGTGTTGATTCGCATATTTATAATGGTTACAATGTTCCTCCTTATTATGACTCTATGATTGGTAAGTTAATCACTTTTGCAGATACTAGACAAGAAGCTATTATTAAAATGCAAAATGCCCTAGATGAAGCAATGATTGGTGGTATTAAAACTAATATCCCATTACAACGCAGGATTATGAAAGACAAAATATTCAATAAAGGGGCGACTAATATTCATTATTTAGAAAAAATGTTGGCTGATGAAGAATAA

Transcript

Sda_Sca01404.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00289	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan
PF02785	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF02786	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF10431	ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR004549	Family	Acetyl-CoA carboxylase, biotin carboxylase	Interproscan
IPR005479	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR005481	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR005482	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR005670	Family	Phosphate import ATP-binding protein PstB-like	Interproscan
IPR011054	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR011764	Domain	Biotin carboxylation domain	Interproscan
IPR013815	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR016185	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR019489	Domain	Clp ATPase, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051602	Family	Acetyl-CoA Carboxylase Biotin Carboxylase Component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48095	PYRUVATE CARBOXYLASE SUBUNIT A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005315	Molecular Function	phosphate transmembrane transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016874	Molecular Function	ligase activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0035435	Biological Process	phosphate ion transmembrane transport	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-