Gene detail

Detailed information of Sda_Sca01255.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_Sca01255.1	RIBULOKINASE	ptg000737l	416164	418516	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_Sca01255.1

ATGGAGAACTCAATGAACAAAAGTCTTTCTGGAAAAGTTGCAGCTGTTACAGGTGCCGCATCGGGGATTGGTCTTTCGTGTACAAAGATGATGTTGGATGCTGGAGCAAAAGTTGTACTAATAGATAGAGATGAGGAAAAATTGCACAGACTCTGTGATGAGTTCGGTGCAAAAGCTTTCCCCCTTTTGTTGGATCTTATGGATGTAAAAGTTGTTTCGGCGATTGCTCCGAAGATTCTCAAGTTAGCTGGAGGGTTAGACATATTCCACGCTAATGCCGGTTCATACGTTGGTGGCAACGTTACTGAAGGAGATCCAGATGTTTGGGATCAAGTTTTGAACCTCAATATTAATTCTACCTTTCGGTCTATTCATGCTGTTCTACCACATATGGTTAAGCAACAGTCTGGCGATATTATCATAACAAGTTCAATAGCTGGAATTGTTCCCGTCCAATGGGAGCCAATTTATACTGCATCCAAGTTTGCTGTACAGGCTTTTGTTCATACGGTCCGGCGTCAGGTTATGAATGATGGTATTCGGGTTGGCGCTGTTGCGCCTGGTCCAGTTGTAACTGCATTGCTTGACGATTGGCCAAAAGAAAAAATGAATGAAGCTCTAGCATCTGGAAGTTTAATGCAACCTCAAGAAGTTGCAGATGCTGTCCTTTTCATGTTAAGTAGACCGCGAAACGTAACAATCCGAGATATTGTCATTCTTCCAACTAATGGCAATCACATCGTTGAACAATCAGCCGATGACATTTGGGCATCTGTTTGTTTTGCAATTCAAACTGCAGTCAGCAGATCAAAGCTGCAAATAGGCGATATTAATGGCATCGGCTTCGACGCAACATGTTCACTTGTGGTTGTCGGGAAAGATGGTGGTCCTCTACCTGTTGGAAACAGCGGTGATCCGAATCGAAACATCATCGTCTGGATGGATCATCGTGCAACTGATCAAGCCAAACGTATAAATAAGACGAAACATGCTGTCTTAAAATATGTTGGTGGTCAAATCTCTCCTGAAATGGAAACACCAAAGTTACTATGGCTAAAAGAGAATAACCCAGATGTTTATTTTGCTGCGCAGCACTTCTTTGATCTTACAGATTACCTAACTTGGCGCGCAACTGGTGACACAGCAAGATCTATCTGCACGGTAACCTGTAAATGGACTTATCTTGCTCACGAGAAAAAGTGGGATGCCTCATATTTTAGACAAATTGGATTGGAAGATTTAGCCAATGACAATTTTAAACGTATTGGTCAGAAAATCGCAGATCCTGGAGTAGCTCTTGGATCTGGGTTGACGGATAAAGCTGCCAAAGACTTTGGCCTTCTTATTGGGACTCCCGTTGCAGTTGGATTAATTGATGCTCACGCTGGTGGGATTGGTACTATTGGCGCTAATGGGAAAAATGGAACTGCTGAGACGCGTATGAGCTACGTTTTCGGCACGTCAGCCTGCACTATGAGTTCTACTAAAAAACCAGCCTATGTACCAGGTGTGTGGGGACCATATTACTCTGCAATGGTGCCTGGACTTTGGTTGAATGAAGGGGGTCAGTCAGCGGCTGGATCAGCTATTACCCACCTTCTTGCTTACCATCCTTCATCTTCTGTAGCATCTAAGCTTGCCACAGCGACAGGACAATCTCTACCCAATTGGCTCGTGACACAAGTAATGTTTAAATGTTCATTAGAATCTGATGCAATAAATCTTGCAGGTAATGTTATTGTTGTTCCTGAGTTTATTGGTAACAGGTCACCATTAGCTGATCCTGAAGCTAGAGCTATCATCTCAGGACTTGGATTTGAAAATAACATGGATAGCTTACTCGCAGTTTATGTTGCAGGAATTTCTGGTCTTGGTTATGGTTTACGACAAATTATAGATGCACAGACTTCCCATGGTATTCATACTGACACAATTGTCATTAGTGGGGGTGCTGGTCAAAGTCGTTTGGTGCGCCAGTTGATTGCAGATACGACAGGAATTGACGTTGCTGAGCCTGGTTCAGCTGAGCCTATTTTGCTAGGTTCTGCGATGCTTGGCGCAGTCTCAAGTGGAGCCTTCCTTAGTATAAAAGATGCGATGCAGAAAATGTCAACATTGGGAGAAATACTTACCCCTGTCACTGGCCAGTTGGCTAAGTTGCATCAAGATCGCTTTGAGACATTCAAGGCGCTTCAGAGTGTGGCAAGAAAAACAAATTGA

Transcript

Sda_Sca01255.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF00370	FGGY_N	FGGY family of carbohydrate kinases, N-terminal domain	Domain	Interproscan
PF02782	FGGY_C	FGGY family of carbohydrate kinases, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR006003	Family	FGGY carbohydrate kinase, pentulose kinase	Interproscan
IPR018484	Domain	Carbohydrate kinase FGGY, N-terminal	Interproscan
IPR018485	Domain	Carbohydrate kinase FGGY, C-terminal	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR043129	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43435	RIBULOKINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016773	Molecular Function	phosphotransferase activity, alcohol group as acceptor	Interproscan
GO:0019150	Molecular Function	D-ribulokinase activity	Interproscan
GO:0019321	Biological Process	pentose metabolic process	Interproscan
GO:0046835	Biological Process	carbohydrate phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-