Gene detail

Detailed information of Sda_Sca00598.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_Sca00598.1	TRANSLATION FACTOR GUF1-RELATED	ptg000737l	64912	69170	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_Sca00598.1

ATGGCTGATAGGTTTATTCAATATTGTGGGGGCTTGAGTGAGAGAGAAATGTCAGCACAAGTTCTCGACTCAATGGATATTGAGCAAGAGAGAGGTATAACAATTAAAGCCCAAAGTGTTACGCTAGATTACAATGCAAAAGACGGCAATACTTATCAACTTAATTTTATTGATACTCCAGGGCATGTTGATTTTTCTTATGAAGTATCTCGCTCACTTGCTGCTTGTGAGGGTGCTTTATTGGTAGTTGATGCCTCGCAAGGAGTAGAAGCACAAACAGTTGCTAATTGTTACACAGCAATTGAACAAGGTTTAGAAGTTATCCCTGTGTTAAATAAAATTGACCTACCAGCAGCAGATCCTGAGAGGGTTATTACTGAAATAGAGGAAGTTATTGGTATTGAAGCAACTGAAGCAGTATTTGCTAGTGCAAAATCAAATATAGGTATTGAAGAAGTTTTAGAACAAATTGTTGCAAAAGTTCCAGCACCAAAAGGTAATCCTAATAGCACACCAAAGGCTTTGATAATTGACTCTTGGTTTGATAATTACTTAGGAGTTGTATCTTTAATTCGTGTGATAGATGGCGAATTTAAACTAAAACAAAAAATTAAATTATTCTCAACTCAAGATGAACATTTAGTAGAAGATATTGGAGTATTTACCCCTAAAAAAGAAAAAACCAAATCTTTAAAAGCAGGGCAAGTTGGCTATTTAATTGCTGGTATAAAGGATATTTATGGTGCACCTGTTGGTGATACAATTCTTTCTAATAAAGATACTGATAACACACCACTTGAAGGATTTAAAGAAGTGCAACCTAGGGTATTTGCAGGGTTGTTTACATCATCATCAGAAGATTATGAAAAGTTCCGTGATTCTTTATCAAAATTACGCCTAAATGATGCAGCCTTACAATTTGAACCAGAAAACTCTGATGCTTTGGGTTTTGGTTTTAGATGTGGTTTTTTAGGTTTATTACATATGGAGATTATTCAAGAACGCTTAGAGCGAGAATATGACCTAGATTTAATTACCACAGCCCCAACAGTTGTTTATGAAATTTTGGACAATAAAGATAATATAACTTATATTGATAGTCCATCAAAGCTACCACCAATTCAAACTATCACAGAATTTAGAGAGCCAATTATCACAGCAAACATTTTAGTAACTAATGAATTTGTTGGTGCTGTTATAGGTTTATGCACAGAGAAAAGAGGTATTCAAAAAAACATTCAATATATGGGTAAACAAGTATCAATAGTATATGAATTACCACTTAATGAGGTTGTGCTTGATTTTTTTGATAAATTAAAATCAGTTTCGCGTGGTTTTGCTTCAATGGATTATGTCTTTACTCGTTATCAAGATGCTGATTTAATTCGCCTAGATGTTCAAATCAACGGTGATACAGTTGATGCTTTGGCACTAATTATTCATAAAGATAACTCAGCGTATAAAGCTCGCGAGTTAGCTAGTAAAATGAAAGAATTAATTCCAAGACAAATGTTTGATGTGGCTATTCAAGCTTGTATTGGTGTGAAAATTATAGCTCGAACAAATGTAAAAGCTTTGCGTAAAAATGTTACTGCAAAATGTTATGGTGGTGATATTACTCGCAAGAAAAAATTATTAGAAAAACAGAAAAAAGGTTTAATACTAAGCTATGCTGCTAAAAAATTCAAAATTGAAGGGAATCAATTAGTTGATGAAATTGATAAAATATTACCACAAACACAATGTGGACAATGTAATTACCCAGGTTGTCGACCATATGCCGAAGCTATCGCTAATGGCGAGGCAGAGATAAATCAATGCCCTCCAGGTGGACAAGAAGGAATAGAGGCACTAGCTGAGTTATTAGATGTTGAAACAATGACTTTAAATGAAGAAAATGGTGAGGAAAAAGCGAAACAAGTAGCACTAATTATTGAAGATCTTTGTATTGGTTGCACGCTATGTATTCAAGCATGTCCAGTAGATGCGATATTAGGTGCTTCAAAAGTTATGACTACCATTATTGCAATTGAATGCACTGGCTGTGCTTTATGTTTACCTCCTTGCCCAGTAGATTGTATAAAAATGATAGATTTAAAAGTAGACTTTATCCCTAAACTTTTGGAAGTGGCATAA

Transcript

Sda_Sca00598.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF00679	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF04060	FeS	Putative Fe-S cluster	Domain	Interproscan
PF06421	LepA_C	GTP-binding protein LepA C-terminus	Family	Interproscan
PF14697	Fer4_21	4Fe-4S dicluster domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000640	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR006297	Family	Elongation factor 4	Interproscan
IPR007202	Domain	4Fe-4S domain	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR010207	Family	Ion-translocating oxidoreductase complex, RnfB/RsxB	Interproscan
IPR013842	Domain	GTP-binding protein LepA, C-terminal	Interproscan
IPR017896	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR017900	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031157	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR035647	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR035654	Domain	Elongation factor 4, domain IV	Interproscan
IPR038363	Homologous_superfamily	LepA, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43512	TRANSLATION FACTOR GUF1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0009055	Molecular Function	electron transfer activity	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0045727	Biological Process	positive regulation of translation	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-