Gene detail

Detailed information of Sda_Sca00227.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_Sca00227.1	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	ptg002448l	14967	17051	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_Sca00227.1

ATGAATATAGTAACAAAGTCTTTTCAATTTGGAAAGCATAAAATCACTTTAGAAACAGGTGGAATAGCACGACAAGCTAGTGGGGCGGTATTTGCTAGTATGGACGATACACAAGTATTAGTATCAGTAGTTGCGAGAAAAGAAGCAAAACCAGGGCAAAGTTTTTTCCCATTATCAGTTAATTATATTGAGAAAACTTATGCTGCAGGCAAAATACCCGGTGGATTTTTAAAAAGAGAAGCTAGACCAACTGAGAAAGAAACTCTAACTTCAAGACTTATCGATAGACCTATTCGCCCATTATTCCCAAATGGATTTATGAATGATGTGCAAGTAGTTATTACTGTAATGTCGGCTAATAAAGAAGTTGATCCAGATATGTTAGCAATGATTGGAACATCAGCTGCATTATCAATATCAGGTGTACCTTTTAAAGGTCCTATTGGTGCTGCGAGAGTTGGACTTATAGATGATAATTATATAATTAACCCAAGTTATAGTGAGCTAAAAGATTCTGATTTAGATATGGTTGTAGCTGGTACAGGAGATGCTGTATTAATGGTTGAGTCAGAGGCTAGCGAATTATCTGAGCAAGTTATGTTAGATGCTGTAATGTTTGCCCATAAAGAATTTCAAACAGTTATAACTAATATTGCAGAATTTGCTAAAGAAGTTGGCACTGAGCAATGGGATTGGCAACCAGAACCAATTAATGAGAGTTTATTAAATGATTTAAAAACAAACTTTGGTGACAAAATTTCTCAAGCTTATCAAATCACAGATAAGATGGAAAGATACAAAACTGTTGGTGAGATAAAAGACCAAGCAATTGAAACTTTAGTAAATGAAGAAGCTGAAATTACTAAAGATGATGTTAGCGATTTGTTTAAAAAAGTTGAGAAAAATGCAGTTAGAACTCGTATTATAAATAATGAGTCGAGAATTGATGGTAGAGATCATACTACTGTTAGACCATTAAAAATAGAAACAGGCATTTTAAATAATACTCACGGTTCTGCAATTTTTACTAGAGGAGAAACTCAAGCTATTGTAGTAACTACTTTGGGTTCAAAAAGAGATGCACAATTAATTGAAACTTTACAAAATGCTGAGCGTCAAGAAGACCATTTTTTATTACATTATAACTTCCCTCCGTATTGTGTTGGTGAAACTGGAATGATTGGCTCAACAAAACGCCGTGAGATTGGTCATGGTCGCCTAGCACGAAGAGGTGTTACTGCTTGCCTACCAACTATTGAAGAATATCCATATACAATTCGTGTAGTTTCTGAGATTACTGAGTCAAATGGTTCTAGCTCTATGGCTAGTGTTTGTGGTACATCTTTATCATTAATGGATGCAGGTGTTCCTCTAAAAGCACCAGTTGCTGGTATTGCTATGGGTCTTGTAAAAGAGGGTGAAAAATTTGCAGTTTTAACTGATATTTTAGGTGATGAAGATCACTTAGGTGATATGGATTTTAAAGTAGCAGGTACAACTAAAGGTATTAATGCTCTACAAATGGACATAAAAATCGAAGGTATTACTAAAGATATTATGGACATAGCCCTAAAACAAGCAAAGGTAGCAAGAATTCATATTTTGGGTGAGATGAATAAAGTTATTTGCACACCAAATACTGAGTCTAAAAATGCTCCTAAAACAGCAGTAATTACAATAGCTAAAGATAAAATCAGAGATTTAATTGGTAAAGGTGGTGAAACTATCAAAGGAATTATTTCTTCTACTGGTGCTAGTGTTGATGTTAATGATGAGGGTATTGTTAATGTTTTTGCTAATGATCAAGAGGGTTTTGATAAAGCTATGCAAATGGTTAAAGATGCGACTGCAGTGCCAGAAATTGGCAAAGTTTATTTAGGTAGGGTTTCAAAAATCGTTGATTTTGGTGCGTTTATTACTATTATGCCTAATCAAGATGGTTTATTACATGTATCTGAAATCGCTCATGAAAGAGTCGAAAAAGTTACTGATTATCTAAAAGAAGGTGAAGAAATTGAAGTTAAAGTTTTAGGAATGGATAGAGGAAAAATAAAATTATCTCGTAAGGTTTTACTTGATAAATAA

Transcript

Sda_Sca00227.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan
PF00575	S1	S1 RNA binding domain	Domain	Interproscan
PF01138	RNase_PH	3' exoribonuclease family, domain 1	Domain	Interproscan
PF03725	RNase_PH_C	3' exoribonuclease family, domain 2	Domain	Interproscan
PF03726	PNPase	Polyribonucleotide nucleotidyltransferase, RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001247	Domain	Exoribonuclease, phosphorolytic domain 1	Interproscan
IPR003029	Domain	S1 domain	Interproscan
IPR004087	Domain	K Homology domain	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR012162	Family	Polyribonucleotide nucleotidyltransferase	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR015847	Domain	Exoribonuclease, phosphorolytic domain 2	Interproscan
IPR015848	Domain	Polyribonucleotide nucleotidyltransferase, RNA-binding domain	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR027408	Homologous_superfamily	PNPase/RNase PH domain superfamily	Interproscan
IPR036345	Homologous_superfamily	Exoribonuclease, PH domain 2 superfamily	Interproscan
IPR036456	Homologous_superfamily	Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11252	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004654	Molecular Function	polyribonucleotide nucleotidyltransferase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0006402	Biological Process	mRNA catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-