Gene detail

Detailed information of Sda_Sca00178.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_Sca00178.1	AMINOTRANSFERASE CLASS III	ptg000367l	11560	13617	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_Sca00178.1

ATGTCTAATTTAACTCCTAACTATGCCCCCCTAGATATTTCCTTTATAAAAGGTGATGGTGTATGGCTTTATGATAAAAATAATCAAAAATATTTAGATTGTTTTTGTGGTGTTGCTGTAACTAGTTTGGGTCATAATCATAAAAAAATCACTGCCGCAATTACTACTCAAGCAAGCCAACTATTGCATACTTCTAATTGGTTCAAAATTGATTCTCAAGAGTTATTAGCAACACAACTTTGTCAGTTATCAGGCTTAGAAAAGGCATTTTTTGCTAATTCTGGAGCTGAAGCAAATGAGGCTGCTATAAAGATTACTCGTCTTTATGCTAAAACTAAAGCCATAAAAAATCCAATTATAATTACTGCTAATAAAAGTTTTCACGGTAGAACTATGGCGACTCTTAGTGCTACTGGCAATGGAAAAATTCAAGATGGTTTTGAGCCATTACTTGATGAATTTATTTATGTTGATTTTGATGATATATCACAAATAGAAAAATTAAGTACTAATAAAAATATTGTTGCTGTGATGTTAGAGCCTATTCAAGGTGAGACTGGTATTATCATCCCAAAAGAAGATTATTTAAATAAAGTTCGTGATATTTGTGATGCTAATTCTTGGTTAATGATATTAGATGAAATCCAAACAGGTATTGGTCGTACTGGTAAATGGTTTGCTTTTTTACATAACAATATCAAGCCAGATATTATGACTTTGGCAAAAGCTTTGGGTAATGGTGTGCCTATTGGTGCTTGCTTAGCGAGCAAGGCTGTTGGTAATTTATTACAAGTTGGCAAACATGGCTCTACTTTTGGCGGTAATCCATTAGCAACCACCACTGCCCTAGCAGTTATCAAAACAATAAAAGATGAAGATTTAATATCTAATGCTAATAACATTGGTGCTTATATTATTAAAAAATTAACAGAAGAATTGAGATTAGTAACAATAGTTAAAGAAATTCGTGGTAGGGCTATGATGATAGCAATTGAATTAAATGTTGATTGTCAAATCCTTTTACAACAATGTTTAGATAATAATTTACTGATAAATATCACAGGACAAAATATTAGATTATTACCACCATTAATCTTATCACAAGATGAAGCAGATATTATGATTAAAATCCTTGTACCATTAATAAAAAAAACTATGAAACACTTTATTAACTTAACAGATTTATCTACTTTAGAATTACAAAGTATTATCAATAATGCTATAACTATAAAAGCCGAAACCAAAAAAGGTGTTATTAACGAAACTCTTAAACACAAAACTCTAGCGATGGTTTTTGATAAATCATCTACTCGTACTCGTGTTTCTTTTGAAACTAGTATGACACAACTTGGTGGTCATGCGATGTTTTTATCTGCAAAAGACATTCAAATCGGTAGAGGTGAACCTATTAAAGATAGTGCTAAAGTCATCTCTTCAATGGTTGATGCTGTAATGTTAAGAATATCTAGTCATCAAGATATTACAACTTTTGCAAAACACTCTAGTGTGCCAGTAATTAACGCTTTATCTGATGTATCTCATCCTTGTCAATTATTAGCTGATTTAATGACTTATAAAGAAGTTAAAGGTGATATTAAAGGCAAAATTGTTACTTGGATTGGTGATGGTAATAATATGTGTCAAACTTATATGCAAGCTGCAAAAATATTTGGTTTTAAACTAAATATAGTTACACCTAAAACATATCAACCAGCAAAAGAATTTGTAGAAAAATATAAAGATGTTTGTAATTATTTCAATTGTGTAGAAGATGCTTGTAAAAATGTTGATTTGATTGTAACTGATGTTTGGGCGAGTATGGGTCAAGAACAACAACAATCACAAAGAATTAATGATTTTAAAGGATTTATAGTTACTCAAGATATTATGGCTATTGCTAATAATGACGCTGTTTTTATGCATTGTCTTCCAGCACATAGAGGCGAAGAAGTATCGACAGAGGTTATTGATGGTAATCAAAGTCTTGTTTGGCAAGAGGCTGAGAATCGCCTGCATGCCCAAAAAGCTTTATTGGTTTATTTATTAAATTCAAAATAA

Transcript

Sda_Sca00178.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00185	OTCace	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	Domain	Interproscan
PF00202	Aminotran_3	Aminotransferase class-III	Domain	Interproscan
PF02729	OTCace_N	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002292	Family	Ornithine/putrescine carbamoyltransferase	Interproscan
IPR004636	Family	Acetylornithine/Succinylornithine transaminase family	Interproscan
IPR005814	Family	Aminotransferase class-III	Interproscan
IPR006130	Family	Aspartate/ornithine carbamoyltransferase	Interproscan
IPR006131	Domain	Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain	Interproscan
IPR006132	Domain	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR024904	Family	Ornithine carbamoyltransferase	Interproscan
IPR036901	Homologous_superfamily	Aspartate/ornithine carbamoyltransferase superfamily	Interproscan
IPR049704	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan
IPR050103	Family	Class-III Pyridoxal-phosphate-dependent Aminotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11986	AMINOTRANSFERASE CLASS III	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004585	Molecular Function	ornithine carbamoyltransferase activity	Interproscan
GO:0006520	Biological Process	amino acid metabolic process	Interproscan
GO:0006525	Biological Process	arginine metabolic process	Interproscan
GO:0006591	Biological Process	ornithine metabolic process	Interproscan
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0016597	Molecular Function	amino acid binding	Interproscan
GO:0016743	Molecular Function	carboxyl- or carbamoyltransferase activity	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0042802	Molecular Function	identical protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-