Detailed information of SQW42HX01_g7052 in Zoroaster sp. YZ-2022 Gene info
Gene IDAnnotationChromosomeStartEndStrand
SQW42HX01_g7052CCR4-NOT TRANSCRIPTION COMPLEX RELATEDHiC_scaffold_25363003953670096+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF14570zf-RING_4RING/Ubox like zinc-binding domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR003954DomainRNA recognition motif domain, eukaryoteInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR034261DomainCNOT4, RNA recognition motifInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR039515DomainNOT4, modified RING finger, HC subclass (C4C4-type)Interproscan
IPR039780FamilyCCR4-NOT transcription complex subunit 4Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR12603CCR4-NOT TRANSCRIPTION COMPLEX RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0030014Cellular ComponentCCR4-NOT complexInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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