| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| SQW42HX01_g5313 | PROTEIN CBG26694 | HiC_scaffold_2 | 6983482 | 6988403 | + |
| CDS | |||||
| SQW42HX01_g5313 | |||||
| Transcript |
| SQW42HX01_g5313 |
| Protein |
| SQW42HX01_g5313 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF00098 | zf-CCHC | Zinc knuckle | Domain | Interproscan |
| PF00665 | rve | Integrase core domain | Domain | Interproscan |
| PF13975 | gag-asp_proteas | gag-polyprotein putative aspartyl protease | Domain | Interproscan |
| PF17919 | RT_RNaseH_2 | RNase H-like domain found in reverse transcriptase | Domain | Interproscan |
| PF17921 | Integrase_H2C2 | Integrase zinc binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR001584 | Domain | Integrase, catalytic core | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR001969 | Active_site | Aspartic peptidase, active site | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR021109 | Homologous_superfamily | Aspartic peptidase domain superfamily | Interproscan |
| IPR034122 | Domain | Retropepsin-like domain, bacterial | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR041577 | Domain | Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain | Interproscan |
| IPR041588 | Domain | Integrase zinc-binding domain | Interproscan |
| IPR043128 | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR050951 | Family | Retrovirus-related Pol polyprotein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR37984 | PROTEIN CBG26694 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004190 | Molecular Function | aspartic-type endopeptidase activity | Interproscan |
| GO:0006508 | Biological Process | proteolysis | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0015074 | Biological Process | DNA integration | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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