Gene detail

Detailed information of SQW42HX01_g505 in Zoroaster sp. YZ-2022 Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SQW42HX01_g505	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	HiC_scaffold_1	15653921	15656920	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SQW42HX01_g505

ATGGCGGTCGGCCCACGCGCCCAGCTGGGAGACGTCGGGAAGGCCCCCCCCCGTAGTCCTCCAGTAGCAGCGGGGGCGCCGGCTCGCCCCACCGTGGCTCCCGGCGCGGCCCAGAGGACGCGTCCCTGCACGCTGGCTCGCGGTACCCGCAGACGGGTCGACCCGAAGGCAGCAGCGGGCGTCGCCCGTGCTCTCGGGCGAGAGAGGAGTCCCTGCACGCTGGCCCCTGTCCCCGCAGACGGGTCGACCCGAAGTCGGAGTCCGAGGGGCGACCTCGCCCGAGGAGCACGGGCGGTGCCCGCTGCTGCATTCGGATCGACCCGTCTGCTGGCAGCGCGACCCAGCGTGCAGGACTCGTCCTCTCGGCCGGTAGCCACGGCCCGAGCCGGGGCACGAACCCCACGGTGTTTCTTCGACAAGTTTTCAACGCAAATTGGACAGAGGTGTTCCGTACTACCAACGGGGTGGGTGTTACGTCTATTATAGGGTGTAGGTCGTCCTCGAGCCCGAAATCGGAAAAAATCAGAGTCCAGCGGACGGGACCCGACTTTGGGACGATCTAGAGGGGGATGGCGGTTGGCCCCCGCACCCAGCTGGGAGATGTCGGGAAGGCCCCCCGTGGTCCTCCAGTAGCAGCGGGCGCCGGCTCGGGCCCGACCGTGGCTCCCGGTCCAGAGGACGAGTCCCTGCACGCTGGCTTGCGGTACCCGCAGAGGGGTCGACCCGAAGGCAGCAGCGGGCATCGCCCGTGCTCCTCGGACGAGAGGAGGAGTCCCTGCACGCTGGCCCCCTGTCCCCGCAGACGGGCCGACCCGAAGTCGCAGTCCGAGGGGCGACCTCCCGCAGCAGCGGGCATCACCCGTGCTCCTCGGGCGAGAGGAGGAGTCCCTGCATGCTGGCCCCCTGTTCCCGCAGACAGGTCGACCCGAAGTCGGAGTCCGAGAGGCGACCTCTCGCCCGAGGAGCACGGGCGGTGCCCACTGCTGCATTCGGATCGACCCGTCTGCGGGGAGCGCGAGCCAGCGTGCAGGGACTCGGCATCTCGGCCGGCAGCCACGGCAGTAGTATATGAGGCGCGTTTCAGACCCCGTTGGTGGAGGGAAAATGTGCAAAATGAGTGTGGTGCAAAATGTGCAAAAATGAGTGTGGTGCAAAAATGTGCAAAAATGATGTTAGCGCGCTAGCGCGAGAGGGCGGGCTTTTGCGTTAGCGCGCTAGCGCGAGAGGGCGGGCTTTAAGTATGACGTCCGTGACGTCATACTTAAAGGTGTAAACCTACTCTCACTATAGGGCACAGTTGACCTTTGACTATCATAATTATAGGGCAGAGTTGACATTAGACCTACTGAATTATAGGGCACAGATAACCTTTGACCTATTGAATTATGACATTTCAAAGAGATTCCTTTTCAGTAACATGATTCAGCGGTTTATAATATAATACATTGAGATTTGTAAAAAACATGTACATATATAATTTATTTTTACTATTAAATTGAACATAAATAAGTTGTTAGGTAAACAAAAGGATAACTAGAAATCTTAATGGATATAATTACTCGTAAGTTGTTAGGTAAACAAAAGGACTACTAGAAATCTTGATGACCATTGGTGAGCACCGGGCAAGTCTGGGAGAACAAAGACGTGTTGACGACGTGATGAATGAAGTCACCGTGTGACGTCACGAACAAGTCCGGACAAGACATTGTGTAAAGGACTACTAGAAATCTTGATGACCATTGGACAGCACTGGGCAAGTCTGGGAGAACAAAGACGTGTTGACGACGTGATGAATGAAGTCACCGTGTGACGTCACGAACAAGTCCGGACAAGACATTGTGTAAGGTTTGTTCTTCGGGATATAAATCGAGCCCTCCTGAGCCTACAACGTCATTCGCTCCCGACAGTTCATCTCAGTCTGAAATTCTCAGTGTTTTATATCAGCCGATTCTAACATCCATCCGACCGACCACATATCCATAATGACCAGCTACCAGAAACCAACATCATTTTCATACGATACGGCCGGTGGTCTTCACGAAGTTCGGGAGTACAATCCACAGTGTACATCTAAAAAACAGAAGTGTGCGGAAAATATGGATTCGGACCGCCTTCAGCGGTTACACCAGCGCATGATTACCAGGGCAGAAGACCACGCCGTCCCCTCGCAGTATGATACTACACCGTCCAAGCGAAAGCTGGAAGAACCATCCACCACATGTCGGTTTCATCTTACGGGAACTAGGCATGTTGTTGTGGAGTCGTTTAACGGTCAGGTGTACGTCAAGATTCGGGAGTACTTTCAACGCAAGGATAAGAATCTATGGACTACTCAAAGGGGCATCAACTTGAACATTCACGAATGGGAGACCTTGGTAGCAAACATGCCGGCAATCAGCGACGCAGCAAAAGAGGTCGAGGTGTGTATTATTATTTATTTATTAAAATGATACGGTTTACATGCAATTTTAATTTTTGTTGGTGGTAACATGTGTATTATGTTAAATAAACTATTATCTTATTTTATTTTAATCACAGGAGGAAAAGAAGAAGCTGAAACAGGCTGCTGAAGACGACGTATCGTCCACGTCTGGAGTTCAGCCATCGGATACAGATCCCGCTGTAATCACGGAGGTGTTGCTGCGAAGACTCGGTAGTCATCTAGGAGCAGATTGGGAGAAGCTCGCTACTTTTCTTAACATCTCGTACGACAAAGTTAGACAACTGAAACGCTATCATACTGGAATTGAAGAACAGATATTTGAAATGTTAATGACATTTAAAAAATCAAGCAATAATCAACGTGAAGTGGCAGATCAACTTGTAACGGCGTTGAACGACATTGGAAGAGTGGACCTTGCCCAAAACTTAACACGCGAGCTGGAGCAGAAGCAACACCATGAAGACCCAAAGCCTCAGCAGGTGAAACCGTCACTCCCGCCGTATGGTGTGGCTTTTCCCGATAATTTAGAAGGTACTGTTTGTTCTGTTTTTATCTGAATGGCGGTCGGCCCACGCGCCCAGCTGGGAGACGTCGGGAAGGCCCCCCCCCGTAGTCCTCCAGTAGCAGCGGGGGCGCCGGCTCGCCCCACCGTGGCTCCCGGCGCGGCCCAGAGGACGCGTCCCTGCACGCTGGCTCGCGGTACCCGCAGACGGGTCGACCCGAAGGCAGCAGCGGGCGTCGCCCGTGCTCTCGGGCGAGAGAGGAGTCCCTGCACGCTGGCCCCTGTCCCCGCAGACGGGTCGACCCGAAGTCGGAGTCCGAGGGGCGACCTCGCCCGAGGAGCACGGGCGGTGCCCGCTGCTGCATTCGGATCGACCCGTCTGCTGGCAGCGCGACCCAGCGTGCAGGACTCGTCCTCTCGGCCGGTAGCCACGGCCCGAGCCGGGGCACGAACCCCACGGTGTTTCTTCGACAAGTTTTCAACGCAAATTGGACAGAGGTGTTCCGTCGTCCTCGAGCCCGAAATCGGAAAAAATCAGAGTCCAGCGGACGGGACCCGACTTTGGGACGATCTAGAGGGGGATGGCGGTTGGCCCCCGCACCCAGCTGGGAGATGTCGGGAAGGCCCCCCGTGGTCCTCCAGTAGCAGCGGGCGCCGGCTCGGGCCCGACCGTGGCTCCCGGTCCAGAGGACGAGTCCCTGCACGCTGGCTTGCGGTACCCGCAGAGGGGTCGACCCGAAGGCAGCAGCGGGCATCGCCCGTGCTCCTCGGACGAGAGGAGGAGTCCCTGCACGCTGGCCCCCTGTCCCCGCAGACGGGCCGACCCGAAGTCGCAGTCCGAGGGGCGACCTCCCGCAGCAGCGGGCATCACCCGTGCTCCTCGGGCGAGAGGAGGAGTCCCTGCATGCTGGCCCCCTGTTCCCGCAGACAGGTCGACCCGAAGTCGGAGTCCGAGAGGCGACCTCTCGCCCGAGGAGCACGGGCGGTGCCCACTGCTGCATTCGGATCGACCCGTCTGCGGGGAGCGCGAGCCAGCGTGCAGGGACTCGGCATCTCGGCCGGCAGCCACGGCACCGATTCTAACATCCATCCGACCGACCACATATCCATAATGACCAGCTACCAGAAACCAACATCATTTTCATACGATACGGCCGGTGGTCTTCACGAAGTTCGGGAGTACAATCCACAGTGTACATCTAAAAAACAGAAGTGTGCGGAAAATATGGATTCGGACCGCCTTCAGCGGTTACACCAGCGCATGATTACCAGGGCAGAAGACCACGCCGTCCCCTCGCAGTATGATACTACACCGTCCAAGCGAAAGCTGGAAGAACCATCCACCACATGTCGGTTTCATCTTACGGGAACTAGGCATGTTGTTGTGGAGTCGTTTAACGGTCAGGTGTACGTCAAGATTCGGGAGTACTTTCAACGCAAGGATAAGAATCTATGGACTACTCAAAGGGGCATCAACTTGAACATTCACGAATGGGAGACCTTGGTAGCAAACATGCCGGCAATCAGCGACGCAGCAAAAGAGGTCGAGGAGGAAAAGAAGAAGCTGAAACAGGCTGCTGAAGACGACGTATCGTCCACGTCTGGAGTTCAGCCATCGGATACAGATCCCGCTGTAATCACGGAGGTGTTGCTGCGAAGACTCGGTAGTCATCTAGGAGCAGATTGGGAGAAGCTCGCTACTTTTCTTAACATCTCGTACGACAAAGTTAGACAACTGAAACGCTATCATACTGGAATTGAAGAACAGATATTTGAAATGTTAATGACATTTAAAAAATCAAGCAATAATCAACGTGAAGTGGCAGATCAACTTGTAACGGCGTTGAACGACATTGGAAGAGTGGACCTTGCCCAAAACTTAACACGCGAGCTGGAGCAGAAGCAACACCATGAAGACCCAAAGCCTCAGCAGGTGAAACCGTCACTCCCGCCGTATGGTGTGGCTTTTCCCGATAATTTAGAAGGTACTGTTTGTTCTGTTTTTATCTGA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	PC4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF02229	PC4	Transcriptional Coactivator p15 (PC4)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR003173	Domain	Transcriptional coactivator p15 (PC4), C-terminal	Interproscan
IPR009044	Homologous_superfamily	ssDNA-binding transcriptional regulator	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR045125	Family	RNA polymerase II transcriptional coactivator Sub1/Tcp4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0060261	Biological Process	positive regulation of transcription initiation by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-