Gene detail

Detailed information of SQW42HX01_g34822 in Zoroaster sp. YZ-2022 Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SQW42HX01_g34822	ACYL-COA DEHYDROGENASE	HiC_scaffold_20	3611012	3613966	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SQW42HX01_g34822

ATGTTTGATTTCTCAAAACGAGGTCAGGTGGTTTTTCGAACTTACTCAGAGCGTAATTCAAGTTATAGACATCCTAGAATCATGACTAAAACAGTTTTGAAAAGCACAGTGTCCTCAGTAATTTGGACACACGAATGAAGTGTTATCCCAGATTATATCACATATTTTAGCAGCAGATTTAAGCAAATTTAAAAAGATATTTTTAAGCATTGATTGTTGTTTGATTTTGTTGCTCCAAGGAAATGGCAGTGATGCTGGTGCAGCCTCCACTATAGCTAGACTAAATGGTGATCACTGGGTATTGAACGGCAGGAAAGCTTGGATCACTAATGGGTATGAATCGGAGGCTGGTGTAGTCTTTGCTACAACAAATAAATCACCCAAACACAAGGTAAGAAAGGACAGCTCATGAGTGCCAGGCAGGGGTGCTCATGCTTGTTTGCATGGTTGTCAGGCAAGGGTGACGGGGGAGACTGGTGCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGTAGCCCTACAATATAACCTGATGGTCATTTGCATATGACCTCTATGTAGCATAGAGGTCATATGCAAATGATTATCAGGTTATATTGTAGGGCCATATCAATGTAGCCCCTTTAAATCTTTGGTTAACCACTTTGTTTGCAAAGGGAGGGTAGGGCCGTTAAAATGACGGAACAAAAGGAAATAAAGACATAGGAACAACAATTTTCTTGAAATTTCATTTATTAATAATAAAACTGAAGAAGCAGCAGAGCTGTGCAAACGTGCGTGCTGGTCGGTGTTGCCCTCTACTGTCTGGAACGTATGGCAACCTAATGACCGAGGTGTTACGGCTGATATGTCTCGTGTTCAGTGAAATCCGGCTGATGTACCACTGGTGCTCTACTCCACCAGTGTTGCCTTACATGATTGACAAGTTCTGTTTTAATTACCTATTGAAAAGTCAATAATAGCCAAAACAAAGGTCAGAAAGGATTCATTGTTGCCCACTTAAATGTTTGATGAGCCTGTATCAGGTGTACTGTAGGACGTCGCCCCCTGTTCGGGCAAGCAGGCCGCTTTGTTCTTGGAATCATTTTAGTGATGAATTTTGGTTAAATAGTTAAAGGCCGCCTTGGACTCTTCCACTCCGTCACTAATTGAGTCCTGGACCATCAGAATGATGACGACTTCAGACCAGATGACAGTGTACTGATCGGAGAAACAAAATTCCAACATGGCTGGCTAACTTCACAATTTTTTTTTTAAGAATCTGACCACCCACAAAACTAATTTGAGCAAAACTACCAAATCAGAATACTCAGGAATAGCTTGGTTTCACTTGTTTAGGAAGAACCACATTACATAACATTTGTTCCAAAATAACCAATCTTTGGCATCGTTTCTTAAAAATCAAGTGTCCATTAATATGAAGAGACAATTGTCTGAATTTCACTTTAATATTGCCAAATATTTTATTTTGGTTGTTTACCAAGCTCTTTTGACTCGCTGAACGAATGACAAGTTTTTACACAAATTTCAAAACCTTTTGGTCAATTCAAATCTGTAAGTGTGGTTATACCTTCAAATTTGCAGCTATATTGCCTAAAATGTCTTAACAGGAGATATTGTAGATGACATTGGGTTTATGAAGGAAAAACTGAACAAAAAGGCAAAACAATTAACAAAAGCCTGTACATACTTATAAATGCTCACATGCCAAAATCAGAATCACCTCGCTCTTATTTGACCAACTGCAATAAATGACCTTTGACTTCACGTGAATACTTCATGAGAATATCCTGAGCCTATCAGAAAGCATAATTTGGTTATGCTTAAAACTAACACCTTGACCTCATTTCTGATTGAATGTTACCTAAGCAAAATTTGCCTCCATTCTCTTAAAAAAAAAAACTTTGAACTAGTGTGCACTTTGAAAAAAGTTTAAATGACTCGTCTATTTACACAGAGAGAATACCAACAGTTAAATTTTGAACACAAATTGCACATTTTCCATTGCAATTTCCATCAAGTATAACACCTTTGACTTTGCATATAACTTTTCTGTGTACAACTCACACTATAAATATTTGTTGTTTTTTCTAAAAATCTGCAATTTGTTTTGGGTTAAATTTTATAAACCTGACAAAATAGTGAATTTGAGAAACCAGTTTTCTATTTTCTGTTCACTGACAAATGATGGCGGCCTTTGACAACAGATTTTGAAAACTTGAAAACAGCAACCTTGCTAAAATAAAACTAAAACACCACTGAATGTTTGACTGCAGAGAGTACTCAAATATTTGACCTTTGACCTTACAAGAACAGACTCTAAAAACCAAACTAGGAACTTTGGATTTTCATGCCCTATTTGGTCATGTGAGCAATAATAAATACATTTTGAATAAATATTGAAAACCCCAAATTTAAGGACCGAGTGGAGAAAAATCGTCATGGCAGATAAACTTCCTTGCAAGTTGCTGTTGTGCTAAATGTTTGATTTCTCAAAACGAGGAAATGGCAGTGATGCTGGTGCAGCCTCCACTATAGCTAGACTAAATGGTGATCACTGGGTATTGAACGGCAGGAAAGCTTGGATCACTAATGGGTATGAATCGGAGGCTGGTGTAGTCTTTGCTACAACAAATAAATCACCCAAACACAAGAAGCAGCAGAGCTGTGCAAACGTGCGTGCTGGTCGGTGTTGCCCTCTACTGTCTGGAACGTATGGCAACCTAATGACCGAGGTGTTACGGCTGATATGTCTCGTGTTCAGTGAAATCCGGCTGATGTACCACTGGTGCTCTACTCCACCAGTGTTGCCTTACATGATTGACAAGACCGAGTGGAGAAAAATCGTCATGGCAGATAAACTTCCTTGCAAGTTGCTGTTGTGCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43884	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0004085	Molecular Function	obsolete butyryl-CoA dehydrogenase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0033539	Biological Process	fatty acid beta-oxidation using acyl-CoA dehydrogenase	Interproscan
GO:0046359	Biological Process	butyrate catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-