Gene detail

Detailed information of SQW42HX01_g21070 in Zoroaster sp. YZ-2022 Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SQW42HX01_g21070	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN	HiC_scaffold_10	2914955	2918150	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SQW42HX01_g21070

ATGCGAGCCGACAGCAGTCGGAAAAACGTAATGAAACACTAAATTAGCCTGTCATCAAAAAGACTTCAAATTTATTGTGTTCATATCTCACGTTGACAAATGATTTATATGATATTCGGTAGTGTTATTGTCATTTTGTTTGAGATAATTACCGTTACAAGCACAACAATACCGAACAAAAACAGAACAAAAATAGTCTGTTCACAGCAAGAGCTGAAACCTCTCAATTTACGAGCCGACTGCGGCCATTTCAAGTCCAAAGTCCTTGACTTTTAATTTAGTAATTGAATGTTATTGAAATTCAGTAAATGAATGTTATTGCAATTCAATACACGATTGCAATACAAAAAAGACCACTCTGTAAAATGCTATTTTTTGAGTGAGCTGTACTGCTAAAATTAACATTAAAATGTCCTTTTGAGTGAACAGAAGCAATTAGGTGTTCGCGCGCTGTCGCACGCGAACATCTAAAAACCGAACAATTTCAAAGAGGTGTTTGCGCTGTCGCACAAACACCTAATTAATTCCGGAGAGAAAGAGTTTTAAAACCATATTTTAACAGAAAACTCCGTCAAGCATAACAGCTAAACCACATTATTATCAAACTGAAGTTGATGTCACACTGACGATTTGAAAGGAATCTCAATCTTTAAAAGTCAACGGTTATCGCACAACGGTTATCACGGGAATTCCACTTAGCGGGAAGATAGAAGAGTCGATATTCTGTACTTTTTTATCGCATATTTTGATTGGTTTAGTTGCAGAATTTCAGCTTATGCAACCATTTTGTTTCTTAACTTGGGACAAAATTGTTTCTTTCCAATTCCATCGGTACCGATTAGGTATGGAATTTTCCTCCATAATTGTTTTATCGGCAAAACTTACTTAATCAATCGAAATTAATCGTGTCTTATAATGAAAGTTGGGTCCAATATCATCATAGTTAATTCCCGTGTGTGAGGTTTTTTTTCATAGAAATCGGAAATCAATCTTATTGTTCAGTCATCAGGCTTCCGTTTTGGTAAGCTAGGGAAATGTTATCATTAAACAGATCTCTTAACTACACATGTGAACGTATACCAAGTCATATTTTCTCTTGTATTACAGGATGTGGCAATCATCATGGCTGCCAATAACGTCAGACAGCCACAGCCAACCGTGGATGCTCAGAACGAGTTCACGACGGCAGCAGCGAACGGCGACATGCAGCGCTTACGGGAATTAAGCGGACAACCCGAAGTGGACATCAACGGACGGAATAAATACGGCCGAACGGCGATACAGGTGAGATACATTAGGTCTGGACATTACATTTCCGTGTGGAAAAAATAGTATTATTTCTTGACTACGACCATGTAATACTGATCAAAACGTCGAGTTAAATGCATTATAGGATTACACTCTGCCAATTATATCTGGAAGACTGTTGTGACACACATGTGTCAATTTGTAATTGTTGTGTGTTCATGAAAAATTAGTGGAAACGCATTCATAATTATTTGTGTTCATATTTGTGACACAGCAGAATGGAAGTGTAACGTGGTATACCTTCCCGGCCTTAGATATGACTTTTAAGATATGACTCTCCTCGCACGTTTATGTCCAGGTTATGACGATGACTAGACCCGAGATAGCCGAGTTCCTACTTGGGTTGGGTGCGAACCCCAACGAGCCAGACCCAGACGTGGGCCGCACGCCCCTACACGACGCGGCCGAACACGGACACGCGGACACGGTGGAGTGTCTGCTGAGGTACGGGGCCGACCCTAAGTTGATAGACCGGAGCAGGGGTAACACCCCAGCTCACCTGGCCGCGGGGGAGGGCCGGCCTGTAAGGGTAAGCGAACAAACTATTTCGTGTTTCATTAGTGAAAAGTTGGTCCAAGCTCTATGGTCCAAGTATCAATTAGCCTGAATTGCTTTCATATTAGAGGAAATTTATTTTGTTAAATAAAAAAAAAATATAAAAAAAATATAAAAAACGGACGGCACCTTTTTAGTAAAGAAAAAACATGTGACAATTTTCTGCCTTACAAACTTGAGCAGCTATTGTGATGTTATTTTCACAGCTTAGTTTTATGAAATATTTACTTGATCTAGAGGATTGAAATTTAATGTACGTTACCAAATACTAAAGTTGTACCTTTTGACTTAATTTCATATATAAACTGTAGTCTTCAGCGGCGTAGCCACGGGGGAGGCTTGGGGGGGGGGGGGCACGTGCCCACCACAAATTTCCAGTGCCCCCCAGGTTCCCCCACGAAAAATCCCAATAGTGCCTCAAAAAAGAAAAAAAAGGAAAGGGAAAAAGCCATACCTCCTGGGCCCCCCACTGAAAAGCAATTCCCCCTGTGCCCCCCACTGAAAAGGTTTTGACTACGCCGCTGCTAGTCTTGCTGGTTTATGTCCAGGGTATATGATTTAATTGAAATATTCACTGTTGTCATTTAAATTAGCACTGCTGTTTAATATTGTATTGGAAAAAAATATCGTATATAGCTGTAGTATTTTATTCTAAAAAAACCCTTTGCTGTTTCTTTTGCTAAACGACAGTTTTTAGAATTGCTATCGAGCGGTTCAACCCTTTGGGAAAAGAATACAGCCGGATTTACCCCCCGCGGAGAAGCAATAGCAAACGGCAGACAGCAAACTGCGGAATGGATCGTTAACTATCACAGTGAGTAGTAATTGCTCCTGAAATATCCTCCCCGTGCATGACATGTAGGGGGCGCTGTTTGACCTCACCGTTCACCACATCCGTGGCAGGTCTCGCTGACGCTTATTGGTTTCTTATGATGGCGTGGGATAGTCAGCGGACGATATTATCTGTAATGATCTTCCATTGCAATTCTACGGATACTTGGGTATTGAAAAGTGCAAAGGGAAAATATACAATTGTTAAACATCCTTTCTGCTGTGTCTAATTTCATGTCGTCTAATTTCCATGTGTCTAATTTCATGAGTACAGATGCACTTATTAAACACAACTTCGGTCAGATTAATATTAGTTTTTGCGATCTAACTTTTTAATACTGTTTTCGTTTTACTTTCAGGTTCGGGTGAAAGTATACGATTAATGCATCTGTGTCGACTAAGCATTCGTCAAGTGATTGGCACACCGCGCTTGCGCAGAATAGGAGAGCTAAGCGACTACCCTCTTCCAGATATCCTTGTGGACTATCTAACATTGTGTTGAATGCGAGCCGACAGCAGTCGGAAAAACGATGTGGCAATCATCATGGCTGCCAATAACGTCAGACAGCCACAGCCAACCGTGGATGCTCAGAACGAGTTCACGACGGCAGCAGCGAACGGCGACATGCAGCGCTTACGGGAATTAAGCGGACAACCCGAAGTGGACATCAACGGACGGAATAAATACGGCCGAACGGCGATACAGGTTATGACGATGACTAGACCCGAGATAGCCGAGTTCCTACTTGGGTTGGGTGCGAACCCCAACGAGCCAGACCCAGACGTGGGCCGCACGCCCCTACACGACGCGGCCGAACACGGACACGCGGACACGGTGGAGTGTCTGCTGAGGTACGGGGCCGACCCTAAGTTGATAGACCGGAGCAGGGGTAACACCCCAGCTCACCTGGCCGCGGGGGAGGGCCGGCCTGTAAGGTTTTTAGAATTGCTATCGAGCGGTTCAACCCTTTGGGAAAAGAATACAGCCGGATTTACCCCCCGCGGAGAAGCAATAGCAAACGGCAGACAGCAAACTGCGGAATGGATCGTTAACTATCACAGTTCGGGTGAAAGTATACGATTAATGCATCTGTGTCGACTAAGCATTCGTCAAGTGATTGGCACACCGCGCTTGCGCAGAATAGGAGAGCTAAGCGACTACCCTCTTCCAGATATCCTTGTGGACTATCTAACATTGTGTTGA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|SOCS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07525	SOCS_box	SOCS box	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001496	Domain	SOCS box domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036036	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050776	Family	Ankyrin Repeat and Cyclin-Dependent Kinase Inhibitor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24201	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000079	Biological Process	regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0004861	Molecular Function	cyclin-dependent protein serine/threonine kinase inhibitor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008285	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:2000045	Biological Process	regulation of G1/S transition of mitotic cell cycle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-