| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| SQW42HX01_g13226 | UNCHARACTERIZED | HiC_scaffold_5 | 19952486 | 19954112 | + |
| CDS | |||||
| null |
| Transcript |
| null |
| Protein |
| null |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01139 | RtcB | tRNA-splicing ligase RtcB | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001233 | Family | RNA-splicing ligase, RtcB | Interproscan |
| IPR036025 | Homologous_superfamily | tRNA-splicing ligase RtcB-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11118 | UNCHARACTERIZED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000971 | Biological Process | obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate | Interproscan |
| GO:0003972 | Molecular Function | RNA ligase (ATP) activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:0008452 | Molecular Function | RNA ligase activity | Interproscan |
| GO:0072669 | Cellular Component | tRNA-splicing ligase complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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