Gene detail

Detailed information of SKAU_T00428400 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00428400	CHAPERONIN	JAINUF010000034.1	78869	87643	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00428400

GTCTGTGCCTTTCATTTTGCATTAACTGTGCGATCGGAACTCCTTAATTGTGCTCTATACAAACACCGGAACTTGTTCTGATCAGGAAAGCATGTAGAGGCTGTTCAGTCTCTCTTGTGATAAAGGGTCTCAGAGAACCTTCTAGGCCGACGTGCATTCTGGGATTTCAGCCGGCTTCAGGGTAACGTGAAAGCTTTCAAAATGATGCCCACACCAGTTATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGCGTCCCCCAGCTAGTCAGCAACATCAACGCCTGTCAGGTGATCGCAGAGGCGGTCCGCACCACCCTGGGACCGCGTGGGATGGACAAGCTTATGGTAGACAACCGAGGAAAAGCCACCATTTCCAATGACGGAGCCACTATCTTGAAGCTTCTGGACGTGGTTCATCCTGCAGCCAAAACTCTGGTGGACATCGCCAAATCTCAGGATGCAGAGGTGGGTGACGGCACGACCTCTGTGACCCTGCTGGCAGCCGAGTTCCTGAAGCAGGTGAAGCCCTACGTGGAGGAGGGGCTCCACCCTCAGACCATCATCCGCGCCTTCCGCACGGCGACTCAACTGGCTGTGAAGAAGATCAGAGAAATCGCTGTTACTGTGAAGAAGGACGATAAGCAGGAGCAGAGGATGCTGCTGGAGAAGTGCGCTGCTACAGCGCTCAACTCCAAGCTGATCGCCGGGCAGAAAGAGTTCTTCTCCATGATGGTGGTGGACGCCGTGATTCTGCTGGACGAGCTGCTGCCCCTCAAGATGATTGGGATGAAGAAGGTGCAGGGAGGAGCCCTGGAGGACTCTCAGCTGGTGGCCGGAGTGGCCTTCAAGAAGACCTTCTCCTACGCCGGCTTCGAGATGCAGCCCAAGACGTACGAGAACCCCAGGATCGCCCTCCTCAACATCGAGCTGGAGCTGAAGGCTGAGAAGGACAACGCTGAAGTCCGGGTCAAAACTGTGGAGgagTACCAGGCCATCGTGGACGCAGAGTGGAACATCCTCTACGACAAGCTGGAGAAGATCTACAAGTCCGGAGCCAAGGAGGAAGACCTGAAGAGGACGATGATGGCCTGCGGGGGCTCCATCCAAACCAGTGTGGGTTCATTGACTGATGATGTCCTTGGGCTGTGCACACTCTTTGAGGAGGTCCAGGTTGGGGGAGAGAGGTATAACTTCTTTAGGGGCTGCCCGAAGGCCAAGACGTGCACCATCATCCTGAGGGGCGGGGCGGAGCAGTTCATGGAGGAAACGGAACGCTCGCTTCATGACGCCATCATGATCGTGCGCCGCGCCATCAAGAATGACTCCATTGtggcagggggcggggccattGAGATGGAGCTGTCCAAGTACCTGCGGGATTACTCCAGGACCATCCCTGGGAAACAGCAGCTGCTGATTGGTGCATATGCCAAGGCCCTGGAGATTATCCCCCGACAGCTGTGTGATAACGCCGGCTTCGACGCCACCAATATCCTCAACAAGCTCAGAGCCAAACACGCacagGCCGGTGTGTGGTACGGTGTGGATGTGAACAACGAGGACATCGCCGATAACTTCACGGCGTGCGTGTGGGAGCCGTCCGTGGTACGCATCAACGCCCTGACCGCTGCCTCTGAGGCCGCCTGCCTCATCCTGTCTGTCGACGAGACCATCAAGAACCCGCGCTCCTCCGTGGAAGCCCCAGCTGCCGGGCGGGGCAGGGGGCGTGGCCGGCCGCATGCCCATTAAACTGGTCCCTGACCCCTCCCCCTCCTTAGGGCAGCATCCAGCTGAGGCCTCTGTTAGAGACGGTCTGCAGAATCACTGCATTTGTCTCCGTTCATAACGTGTTTTGGTTAGCGTCACCTTTATGATTAATCCCCACACCCGTGAGATTTGGCTCTTTCCACGTCACAGCGCTGGCCGTTCTCCCCACTCACACCGGAACCCAGCGGGATGAAGGGTGCCCCCTGCTGGAGCTGCCTGAACACAAAGCACTGTGTTCTGTAATGGCTCTGATGTCCAGCTGTCCAGAGCAGCCTGTTTAGTTCCACTCGTTACTTTGTCTTTCATTCTATGGAGCTATTTATTGGACCATTAAACAGACGTTTCTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002194	Conserved_site	Chaperonin TCP-1, conserved site	Interproscan
IPR002423	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR012720	Family	T-complex protein 1, eta subunit	Interproscan
IPR017998	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR027409	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027410	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR027413	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11353	CHAPERONIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005832	Cellular Component	chaperonin-containing T-complex	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-