Gene detail

Detailed information of SKAU_T00428310 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00428310	GLYCOSYL HYDROLASE-RELATED	JAINUF010000033.1	5928	71514	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00428310

cGTTCTTAGCGCCCAAagaacatgccgttaaaatagcaaaagtggacttggacacgccctaaatgaactttacgccatgcgcttagaccaagcaccaagatcgccaagatagagccccgggtcatctgcatagagcaagAATTTAGCTTCCTTGTTATTTAGGGTTAGGCCAGGGGTTGTAGATTGTTCCAACAGCAACGCTAACTCATTAATATAGATATTGAAGAGAGTTGGTGACAAGTTGCATCCCTGAAAAACACCTTGCCCTTGAGTGAAGAAATCTgttcttttattgccaatttttacTCCACTTATTATTGACATAAATTGATTTGATTATGTCATAAACTTTACCCCTACATAAAATTTTATAATATAATCCCTcttgccaaatagaatcaaatgcctTCTTTAAAAATTTTACCCTTTGTGCTGTGTTTTGGTAGAAAGCCAATTTGTCCTTTGCTCAAGACATTGCGTTCGATAAGAAAGGCCAGCATTCTGCCATTGATAATGCTGCAGAAAACCTCCCCCAGATTGCTGCTCTCTCTCTGACTGTCTCTTCTCTCTCATTCTTTTCCtctcttacctctctctctcctctctcattctTTTCCTCTTACctgtctctctcctttctgcctgACTGTCTCCTCTTTCTATCATTCTTTCCCTCTTACCTCTGCCCTCTCTGTCTGACTGTCTCCTTTCTCTATCattctttccctctgtctgactgtctcctctctctcactcactcactcactcactgtgacCCTTGTCATGACTGTGCTCTAGGACTTGGCCATGTTCCAGGAGGGGCGTGGCAGTGAGGTGGTATGGGGTGTGGCTGAATACTGGATCTCCCGGGTCACATGGAGCACTGAGGAGCAGTGTTACCACATTAAAGCGGTCATGCCTCCTGATGAGTATTACTACAATGTTGACAACTCTGTCTACACCAACACCGTGGCAAAATACAGCCTCCTTTTCGCTGTGGAGTTGGCGATACTCCTCCAACGTCCGGTGCCCCCAGAGTGGCAGGAAGTAGCTGAAAAAATCAAAATCCCGTTTGACCCTGAGGTGAACTACCACCCTGAGTTTGACGGTTACAAGAAAGGTGGTCCAGTGAAACAGGCAGACGCCGTATTGCTAGGATACCCTCTGGGGCTTCCCATGAGCCCAGAGGTTAGACGGAATGATCTGGAACTGTATGAGGCCGTGACTGACCCACGAGGGCCGGCCATGACATGGggcatgtttgctgtgggatGGCTGGAACTGGGGGATGCTGTGAAAGCTCAGAAGCTGCTGAACAACTGCTTCAGCAACATCCGGGGTCCCTTCCAGgTTTGGAGCGAGGGGTCAGATGGGTCAGGTGCAGTTAACTTCCTGACAGGAATGGGAGGGTTCCTGCAGGTAGTACTGTTTGGATACACAGGCTTCAGAGTGCAGAAGAGCTGTTTGACCTTTGCCCCCCTCCTCCCTAATGACATCAGAGAGCTGCATGTTTTGGGCGTGTCTTACCTGGGAAATAAGATGGACTGGGTGGTGAGGGAGGAGgaggtgaatgtgtgtgtgagagaggagtcAGCAGAGGTGGGGCCTGCTCAGCACTACCCCCTGCAGGTCGTCCTGAAGAACTCTGGAACCATAATCCCCCTAATACCAGGAAAATATGTGACCTTTCCTCGAGAGCCAGGAGAAGTACGGAAACTGAACTCTGCCAGCTCCTGTTGGCCCTTGTAAGACAGCGCTCCCGCTCCTCACCTATAGGACCGCTGTCGTGTGGGACTGTGTCACAGAGGAAACCATTCCCACAAATGTTGGCCATCTTTGAAAAAGGGTTGCCTCTGGATTTATAAGGAATGGGGGGAATTAACTATGttttatatacatattttttgaTGTAATTGTGAGCATTAAACAGAATTGAGTCACACTTTCCATTGATAAAAAACCAGAAGTGCTATCAACATTTGACGTCTTAGAACTATTGCTAATGAGTGTGTGGAATCGGGTAAAGAACAGCCACAAAATCAAACCGTTTGCAAAAGAGGCCAAAGGATATCGATGGTGATTAAAAACGTGCTATGGGGCAATATTTCAAGCATGATCCAGTATTCTACAGAACTACATATACGTCACATTTTCTATGCAATGCAAGGATCAATCAATCATTGTTCTTTGATCTTATGATTCTAAATGAATAACCTCTCGGCGTTAAAAAGTATTTTCTGTATTATTTCTATCTTTTCTAGTTCagcatttagatttttttcaatTCTGGTTCCccatttttctgttatttttatggTGGAATATTGAATATGGGTGCTTTTGTTCACTGTCCAATTTGATACTGAAAAtgataaaattattaaaaaaggTTTCAGTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03632	Glyco_hydro_65m	Glycosyl hydrolase family 65 central catalytic domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005195	Domain	Glycoside hydrolase, family 65, central catalytic	Interproscan
IPR008928	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR012341	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11051	GLYCOSYL HYDROLASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0047402	Molecular Function	protein-glucosylgalactosylhydroxylysine glucosidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-