Gene detail

Detailed information of SKAU_T00427940 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00427940	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	JAINUF010000031.1	549838	582020	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00427940

gctatagtgtccttcgctgcaacgctctggcttgtctttcacaaatgtcatggcaaaagaaaaaccgttcgcgtagctcgaagcgtccacattcggccctaaatgtctaaattgtactgacgcGTACGTAACGGTAAGTTGCctcagctaaaataagagtttacctggaagcctgcccacatgtgctggccatgtcaatcaaatggacaggaaccgcccattcatgacgtttacaccattttagctgtttctggctttaaaaatggcggtgggatgtcaacagtgtagcattcaaaacattaacaaaaaaaaacactgcgaAAGACTTATGAGGTTTAACATACATTcagcatgtttattagaccacaaggatacatacaatgttttttggggagaaaatttgaatgtaaacaaaggacgagttgtttacaatgaaactacatagtatacctttaatgtttCACACACTTCATTGCGTGTGTGCGTACGTCTGTGTCTgcatgcgtatgcgtgtgtgtgtgcgcgcacttgTTCCTGTATAACGTAGTTGGGGTTTCCTTCATTTCTGAGCCCACAATACActtaggacctgatttactaagacctttaacacatgccaaaccttttagcacacgcaagacCAATGAATGATTGTCCCTTGGGTTACACATGGGAGCACTGCCGCACAGCACCCAGAGTGCAGGTGGAGATACAGCCACAGCACTACAGCACAGCACCCAGAGTGCAGGTGGAGATACAGCCACAGCACTGCAGCACAGCACCCAGAGTGCAGGTAGAGATACAGCCACAGCACTGCAGCACAGCACCCAGAGTGCAGGTAGAGATACAGCCGCCTTTCAGTACAGAAGGAAACAAGCAGTGATAAAAGGATGGCACATGGTTATCTTATGCAGGACTGCACATGTAGATGCAGATATTACATTTAAAAGAAAGCATGCATGCTATATTGTCTGTGCTTGCGGAAAACCACATAATGTGCACTCGGTGGAGATTCAAAATGGGTATACTCAAAATGGGACGTCCCAACTGAAGGTGAAACCGTGGGAAGCGACTGACCGCAAATGCGGTGTGAGGCGCTGTCCCCGCTGCCTGAATTCCATAAAAGCCCGGGCCTCCTGTGATGATGTCATTCTCCTTTCAGAACGGCTACATGGGGGATAAATTCAAGATTATGATCGAGACGTGGCACAAACCTGACCTGGGGACGGAGGAAAACGTCCATGGACTGGACCAGGACACTTGGAGGGATGTGGAGGTGGTGCACATCAACATTGCTGACAGAAGCCAGGTAGCCGCCAATgaTTATAAAGAAGACGAGGACCCGGCTTTGTTCAAGTCAGTGAAGACAGGCAGAGGTCCCCTTGGGCCCAACTGGAAGAAGGAGCTGGCCACAAAGACGGACTGCCCACGGATGTGTGCGTACAAGCTAGTCACCGTCAAGTTCAAGATGTTTGGCCTCCAGGGCAGAGTGGAGGGCATGATCCAAAAGCAAGAGAAGAGAATTTTCACCAACTTCCACCGGCAGCTGTTCTGCTGGCTGGACCGCTGGGTGGAACTCTCCATGGGGGACATCCGGAGGATGGAGGACGAGACACAGAAAGAGCTGGAGGAGATGCGGAAGAAAGGTTCTCTGCGGGGGACCAAAGTTGCAGAGGATTAACCCCTCATAGCCGTGTACCTCAGGCTGTcttcgCAAGAAAGGTGAAGTTCGAGGCACCAGCGCAGATGATGATTGAAGCGGCCGCACATGCTGGGAGCGGACATGCTGCGTTTCCCTCTGCATCCCGTCTGGTTTCCAGGGTTACGATCGATCAGTAGTACTGTACCCAACCTCACCCAATCACAAGCGTCCTTTTCATAATGAATCTTTaaaaaatttgagaaaaataaatatatatatattttttaaattgtacaaATCGTGAGGACACTATATGTGTTTCACCGGGGCTGTTTTTTTGACATCCATGTAATGCTTTGAGTTGATGAGCATTAAGAGATGGCTGTATAATGCACTTATCCAGACCCAACCATCTTGGCTGTCATAACCTCATCTCGACGGGTGCTTGTCAAAAAGTTTCCCCCTTTTGGTGTTTAAAGTTGGTGTTTTGgtggttttatttttctttaatttgtttgtCATAAACAGAAACAGACACTATCACTCTTCAACCTGCAGATGAACAGTTGAATTCTGATTTGCTGGGATGTAGATTGCTTTGAAGGTGTTTTGCTGGCTTGTGTCAGTTTGTTAcagattaccccccccccccccccccttccaaattCCTGTCTTTTAATCAGTCTTTAATTTTTACAACACATTTTGTAAAACCTAGACATGGTGCGTAAGATTCTCTCACTTTCCACAATCATCTGGacaaaaacaaatacacacacacgcacatgctcacacacactaaGTCTGGATGCCTGTTCAGCGACGTAGCGTTGCGCGCGTGTGTTTAACGCAGTCCGTCTCACACACACTAGCGCTGTGCTTTTCTGCCCCTAGGCCTGAAAGGGCCTCTTCTCCACACTacatatcccagcatgcctttACACTGAGAGAAACATGGTGAGGTTCACTCCTGCACTCCCCTGTGCCAGGGCACTTAGCCACACCTTCCTTATGCACTTAGAACACGTGCATAAGCTTAGAACAAGCTCCTCCTCTTCGCTCCTTATTTGGCTTTATTTGTAGCACCCGCTGCAGTTTACGGTAATGACTGGGCCCACTGCTCATCCTTATCCTGTTGGCGGTAATGTGCCCAGTCACCTTGTGACCGTCAGATCACCCGCTATATTCACCCACCCCTGCTCTCTGAGCACATGCTGACCACACCCCCTCCCTCAAAGCTTCGCCCCTTTCTCAGCAACCACCACCTCCTCTCTCTACAAGACACACCCCCTTCTGGCCTGTAAGCTTTTGCCATAGCTGCCTTCATTTATACAACCGAGAGAACGCGGTGACCTGTCCTGTTTCCTTAAATCAAATGCTGTAACCTTGCCTTTCCTGTTAGAGCACAATGCCCTGAGAAAGGCCTGCATTCCCACCGTTCTGGCTCAGGTATTAAAGGCTCAAACTGAAGCTTTCTGCGCTGCTCTTGCGTGTGTTTTTTCTACATGTGGGTCTAAGCTCTATGCCTGTTTACATGCGTGTTTTTCTACGTGTGCCTAAACTCTATGCCTGGTAACATGTGTGTTTTTCTACATGTGGGTCTAAGCGCTGTGCCTGTTTACATGCATGTTCTACATGTGGGTCTAAACTCTATGCCTGTTTACATGCGTGTTCTACATGTGGGTCTAAGCTCTATGCCTGTTTACATGCATGTTCTACATGTGGATCTAAGCTCTATGCTTGTTTACACGCGTGTTTTTCTACATGTGGGCCTAAGCTCTATGCCTGTTTAAACGCATGCTTTTCTACATGTGGGTGTAAGCTCCATGCCTGTTTACATGCGTGTTCTATATGTGGGTCTAAGCTCTATGCATGTTTACACGCGTGTTCTTGTACATGTGGGTCTAAGCTGTATCCGTTTACACGCATGTTGCACAGCCATTCATAAGAACTTGTTTGGAGTTAAAAGCAATAGAATACCTTAAGATGTGAATCCTGGGCGATATGTGCTGATAATGAAGCCTTATTCTGTAAGTGGTTGGCCTTCCTTAAATAAGGGTTTCAGGTAGAACATTCCAGGAGGGGAGGAAGACCAAACGTGCATTTAGCCACTGCCTGTTCTCTGCTTTATTTAGTGTGTCAGTTATCAGCTTCCACCAGCAGGGGATGGCGAGCCTGTACCCTAAGTGCAGGTAGTCTGCTGCTGTTTGCTGGTTCATATTTCTGATGATAGTTTCCAGGGATGAGAAGCTACAGCTGTCTGTATTGATTACGTTGTGTttgtttctcttttcttttaaatGCTATTTTAGAAACTTTATCTTTCTTTCCGGGCTCTTGGTGGCACTGGTTTAGTACTGAAAAAGCAACaagaaaaaagtttatttttggtTTAGTCTGCACTAAAACCATGCTATCAGGAAGGGTGTGGGGCTGGGAGGGGGATACAGGGTTATGAACAGTGTCGTAAATCTACCTGCAAGTCTGACTGCTGTTTAAGTGGTTATTAAATGTGGATTTAAATGTGCTTTCTGATCATGCATTTCAGTATCTGATCTGTACTCATTCAGGGGAAACTGTGAATGTATCACATTATACTATTTCTAtctcttcttttgtttgttcttTTGCAGATTTTGTGCTGCAGAAAAAAAGGTCTTAGACAAACCTAAATGAATATCTAATAAATTTCAACACAAAGCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02121	IP_trans	Phosphatidylinositol transfer protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001666	Family	Phosphatidylinositol transfer protein	Interproscan
IPR023393	Homologous_superfamily	START-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10658	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005548	Molecular Function	phospholipid transporter activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008525	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0008526	Molecular Function	phosphatidylinositol transfer activity	Interproscan
GO:0015914	Biological Process	phospholipid transport	Interproscan
GO:0031210	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-