Gene detail

Detailed information of SKAU_T00427910 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00427910	B-BOX DOMAIN CONTAINING	JAINUF010000031.1	470331	510278	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00427910

gcagtttgtacaaacgggcggcgaaaaagacttccgagttTCAATttagtttttacgaggccgtggaaaggcaatgggtgacgtcgcagtggctttgtccatatttttatacagtctatgcttgggacgcagccacagaactgaagcggagcttgagttgccagggtaaccaaccaaacaattcaaCATGTGAGCTACCCaatgtcaactagctagctaactagcagcagtCTTCACGAAGAAACAACAAACAAAGACATGGCTTCCTCTGCTCAAGACTCAGAGGAGACTCCAGTTCTACTCAGATCCCACCTGAAATGCTCCATCTGCCTAGACCTGTTTAACAAGCCGGTAACCACCCAGTGTGGTCACAGTTTCTGTCAACGCTGTCTCCACCACACCCTACAATTCAGTGAACAGGTGTGTCCGCTGTGCAAGACATGGCTCAGGCAGGTGGACATAAAGGTGAACATCCTACTGAATGGCCTGGTGGAGGACTTCCATAAGGCTCAGGAGAGGGGGACAGAGGAGATTTTGGATGGGGGCGTGGCCTGTGACATGTGCATTGGGAGGAAGCTGAAGGCGGTAAAGTCCTGCCTGGTGTGTCTGATCTCCTACTGCCAGCCTCACCTGGAGAGACACCTGTCGGCCCGCTGGCTGAGGGGGCACAAGCTGGTGGCCCCTGTGAGTGCTCTGGAGCAGCGGGCGTGTGCTGCTCATTCACGCCCCCTGGAGCTGTACTGCAGAGACACACAGCGCTGTGTTTGTGCACTCTGTGTGGATGACAGCCGCCAGGTCGTTCCCGCCGAGGCTGAATGGGACAGGAAGAAGGATGTGATAAAGAACAGGATGGATGAGATGAAGAGGAGGGTTGAAGTTTGGAAGAGGAAGGTGGAGGACATCAGACAGGAGGAGGAGCTCAGCACAgGCCATATTGAGAGGCAGCAGTGGGAGATTGAGGAGGTGTTTGTGGCAGTGATGGCACGGGTTCAGGAGGCTGAGACCCAGCTGTTACAGCCTCTGATGGAGAAGAAGAGGGAGGTACAGAGGGAGATGGAGCAGGTCACCCAGGAGATGGAGGTGGAGATTTCTGACCTCCAGCAGAGGATCTCAGATCTGGATCATGCCGCCAATCATGAAGACCACATCCTTTTCCTCCAGagaccACCTGTGCCCGGCCCAGATGCCAGAGACTGGTCCTGTGTTTCCCTGGATACGGAGCTTGGTCTGGGCAGTGTGAGAGAGGTCCTTTCGGCCGTGATTGAGCAGATCAATAAAGAGCTGGAGCAACTGTCCTCCACTGATATTGAAAGGATTCAGAAGTTCTCAGTGggagtgacctttgaccccgaCACAGCGAACCCTAGACTACGCCTATCGGATGACAGGAAGGAGGTATGGGACACGGGTGTGAAGCAGGACGTCCCGGAACTGCCAGAGAGGTTTGACCTATTCGGCAGCATCCTGGGATGCCCCCTCTTGTGTTCGGGGCGGAGTTACTGGGAGGTGCAGGTGGGTGGGAAAACAGGCTGGGATCTGGGCGTGGCCAAGGAGTCCATCAACAGGAAGGGCCAAGTCACCATGACCCCAGAAAATGGCTTCTGGTGTTTGGTTCTGTACAACCAGGACAACTACGCCGCCATGACCagcccccctctcactctctctctgacaTCCAAGCCCAAGGCAGTGGGGGTGTATGTGGATTATGAGGGGGGTCAGGTCTCCTTTTACAACGTGGAGGCCAGGACTCATATCTACTCCTTCACTGGGTACACCTTCACTGAGGAACTCTATCCATACTTTAGTCCCCATGTCTGTACCAATGGCAAAAACTCCGCCCCACTGATCATCTCTCCTGTCATTCAAACATAATGCTCATTCTTATTCATTCATCTTTGTTTAATCTGGTATGACACCTGAGAAGTCGATTCTCATTTTCACTGTCTGACTGACAGTGTCATACTCTGCATTCTCAGTACCAGTCCTgtcaacatgtcagaggaatcaAATGGAGATTTTAATTCTCAAATAATCTCATATGTTATCTCAGGTTGTTAATGTTCAAATAATCACCATCTCATATGTCGTCTCAGGCCGCTTGATTTGAAAACAGCATTGATGACTTGTTTCATTtgttttcagccatattgtttttCATGTGCATAGTTATAAGAAATTCAATGCTCtatgtttaaaaatattaaaatcattatgaataaataaattataacacA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622	SPRY	SPRY domain	Family	Interproscan
PF13765	PRY	SPRY-associated domain	Family	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR003877	Domain	SPRY domain	Interproscan
IPR003879	Domain	Butyrophylin-like, SPRY domain	Interproscan
IPR006574	Domain	SPRY-associated	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR051051	Family	E3 ubiquitin-protein ligase TRIM/RNF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25465	B-BOX DOMAIN CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-