Gene detail

Detailed information of SKAU_T00427700 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00427700	MYELIN P0 RELATED	JAINUF010000031.1	28573	145646	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00427700

ATGGAGTTTGAGAGAAGGGGCACCCTGTACTGGGGTGTGCACTCAGGGGAACCGGTCCTGGCTATGCTGCTCATCACCCTGACACTCGGGGTGTGGGATACCCAGGCTCTTGAGATGTCCGTTGGAAAGGTGCCATTCCTAGAGGCAGTAAACGGCAGCACAGTGCTACTACCCTGCACCTACGCTAGCTGCATCGGCATCAAGGACCTCTACTTCAGATGGCAGTACAATGACAATGGCACCATGAACACGCTGTGTGATTCGATTATCCCAGAAGATGGTGCGAATCCGCATGTGAACATTGTCGGGGAGCGCGTGGAGTTTGTGGGAAAAAACAATAACATCTCCATCTTACTGTGGAACATCACCTTCGAGGACGACGGCGAGTATACCTGCTTTGGACGCAACCCCAAAGAAAAGGGCAAAAACCACAGCGCCATCTTCACCCTCTATGTGGTGGACGAGTTGAAGGTGGTTGATAAGACGCTGACCATCATCATCGCATCAGCTGTGGGCGGGGCCATCGGGCTGTTTGTGGCCTTCATGCTGCTGAAGAATTTGACCCTCTTTGTCCTCGCCAAGCTCGAAGAGAAGAATAAAGAGTGCCTGGTTAGTTCTTCAGGGATTGGTAACACAGAAAACGGCCTCTCAGGATCCAAGGCAGATTGTAAAGCAACACCAAAGAAggcatgaaaacatgcatgtgtgtatatgtacacatgtacacacacacacacacacacacacacacacacacacacacacacatatatatatatgctaaactggtatttaaaaaaagaaaaataataaactactgtttttttttgtttttttaatctatGCTTGAGACTGCAATATGCCCTGTATCCACTGGGCTGGGTCAAAGCAGACCACCCCCCACAGTAGTGCTCTAAATGTGAGGCCTACTTCACCCCAACATGGAACACATAAATATTTTGTTGCATTCTTGTCAGAACTATTAtatttcttttaaatttattagtGAATGCCATGtttaatttgtatttatattaGTCACACATTGCCTActagttttactttttaaaagtttAATTTTTACCAAATGTATTTACAAATGGGTTATTTTATgattttaattgaaataataaatAGAAATATCAGATAACAAATATGATACACTTATCAAACTTTAAGTAAGACTATTTTAGAAAAGTAGTGTTTGCACACCAAGTATTTGCAGCATGGGTACAACATAGAATTTGCAGTATTATTGTATAGTTAATATCGAGATATAATTGCAATCCAGAAGGTTTAATGGCAGCCCCTTTAAATGACTGATGAACCAAAATACAtgattattttagttttgttagAAATCTTTGTAGAAATTAGGAAACAATGCAACATTAAAAtccaataaatataattaaaaaaacaaaaaaagcaatgCAACATTAGCAAACCAATAATGAATATCAATAATCAACACATtcggcctcatttatcaatatggttggTATGGTAAAAATTAGCTTATAGTTGAGCGTACCAACTTGAATACGAAAATCtcatgtgtgattcatcaaaatgatctgagcgtaaatgtgttcgtaggttgaaatcagacttgatcgtatattagggtgcacatcattatgaattaccatactcacacgcccatttactaccatatttgacAGGGCCACTTCCCTTAAAACACATGCCAACgtggttttctccagtattataggccatggtgggcaacaggaaagcaatgaagaagaatttttctgtgagggtaaaattgaaatgcttatgaatgaacatgaaaataaacgtgtgcttattgggagcgttgTAGTGgggtgcagcctagctcaaaagccgttatgtggcagaggataaacAGGACTAAAATGATTCTTCTGAATTGCAAACTACAgctgagattttaaaaaataataattcacaaaaaagttctgccggtacaggtggaggaaagggcatcccgcTGCAAAAGAGAGGATGGGGGGTATCATTGAGAAAGTGGTCGtggaaggagtgatagaagacTCTTGATTTGTCAAGACTTCAAGTTTCTCTCATGCAGGGTTGCGAcgtttgctaggtcttctaggctaataaagctagatctgattttttgaaaaaatagaaaaaggtaacttttttgcgtcttgcatacaacatgactggtaatgcggaattattttcatatggctgtctccaataaatccttatacagaggctatttcctgatttaatcattttaaccagcttatgcttcattccatttatagGCTGCATGTCATgagaaaataatagcagtgtcaAATTAAAGATATTATTTTTTGCCCATTAGGCTTCACAACATAGACTTGCCtacgtctacagccacaatgCATTGGTCCAAGGTATTTTTATGATCACTATGctgatttttaagctcacataacccATGTTTTCCAAAgggcacctttttgtttatcacctgttgactccgcagtgctctgaacaaaagttctttttttacattatttaggctgcacaactattgttccctcgctgttcattaaatgcaatgtcgctgcctcaccACTGGGAAAAAGCGTACACaaggtcaagagctgtcgtgagatttcatcgtaccgtaaacccgcgttcattttgataaatctggaaatttGCGTACGCACACTTTCCGGTCAGATTTGAatgtacgcatgaatgataaatgaggcccattttgTTTGGAGATATACTTATATTTTTAGGTTAGTAATTtgcaaaaatacataattattcAGTTTTATTAGACAAGATGAAAATGAACTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07686	V-set	Immunoglobulin V-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000920	Family	Myelin P0 protein-related	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013106	Domain	Immunoglobulin V-set domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13869	MYELIN P0 RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001518	Cellular Component	voltage-gated sodium channel complex	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0017080	Molecular Function	sodium channel regulator activity	Interproscan
GO:0044325	Molecular Function	transmembrane transporter binding	Interproscan
GO:0060307	Biological Process	regulation of ventricular cardiac muscle cell membrane repolarization	Interproscan
GO:0086002	Biological Process	cardiac muscle cell action potential involved in contraction	Interproscan
GO:2000649	Biological Process	regulation of sodium ion transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-