Gene detail

Detailed information of SKAU_T00427320 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00427320	FIMBRIN/PLASTIN	JAINUF010000029.1	980065	996682	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00427320

ATGCGTTGCCCTGGTTTCAGGTTCCCATTGCAGAGCGTGTTCAAGATGGCTGCCTCCACGCAGGTGTCCCAGGAAGAGATTGAGGATCTTAAAGAGGCCTTTGCCAAAATCGATGTGGACTCCAAGGGTCACATTGGTACAGGTGACCTGACTGACCTCTTCAAAGCAGCAAATCTGCCCTTACCTGGATACAGGGTCAGAGAGGTCATTCAGAGTCTGGCTGCCACTGGTGAACAGCATGAGGGCATGGTCACCTTTGAAGAGTTTGTCACAGTCGTGAGTGGACTGAAGAGTTCGGAGGTGGCTAAAACTTTCCGCAAAGCCATCAACAAGAAGGAGGGGATCTGTGCTGTGGTGGGAACATCAGAGCAGTCCAGCTCAGGGACACAGCATTCCTACTCAGAGGAGGAAAAGGTGGCCTTTGTTAACTGGGTGAACAAGGCACTGGAGAACGACCCCGACTGCAAGCATGCGCTACCGATGGACCCTAACACCAATGACCTTTTCACTGCTATGGGAGACGGGATCGTTCTCTGCAAGATGATCAACCTCTCAGTGCCTGATACTATCGACGAGCGCACCATTAATAAGAAGAAGCTCACACCCTTCACCATACAGGAGAACCTTAACCTGGCGCTGAATTCGGCGTCGGCCATTGGCTGCCATGTGGTGAACATCGGAGCCGAAGATCTGAAGGAGGGACGCCAGCATCTGGTCCTGGGCCTGCTCTGGCAGGTCATCAAAATCGGCCTGTTCGCCGACATTGAGATCAGCAGGaacgaggctctgaTCGCTCTGCTGAGAGATGGAGAAACTCTGGAGGATCTAATGAAGCTCTCTCCTGAGGAGCTGCTGCTGCGCTGGGCTAACTACCACCTAGAGCAGGCCGGCTGTACGAAGATCAACAACTTCAGCTCCGACatcaagGACTCCAAGGCGTACTACAACCTCCTGGACCAGGTGGCCCCCAAGGGAGACGAAGACGGAATTCCAGCGATCCCCATGGACATGTCCGGGATCAGGgagaagGATGATGTGAAGAGGGCAGAGTGCATGCTGGAGCAGGCAGACCGCTTGAGTTGCCGGCAGTTTGTCACGGCTACCGACGTCGTCCGCGGCAACCCCAAACTCAACCTCGCCTACGTCGCCAACCTGTTCAACAAGTACCCGGCGCTGAAGAAGCCGGAGAACCAGGACATCGACTGGAGCTCCATCGAGGGTGAGACCAGGGAGGAGAGAACATTCCGGAACTGGATGAATTCTCTGGGAGTAAACCCCCGAGTCAACCACCTGTATGCAGACTTGGATGATGCCATGGTCATCTTCCAGCTCTATGAGAAGATCAAGGTCCCAGTGGACTGGGGCAGAGTAAACAAACCCCCCTACCCCAAACTCGGGGGCAACATGAAGAAGCTGGAGAACTGTAACTACGCAGTGGAGCTGGGGAAGACTCAGGCTAAGTTCTCGCTGGTGGGGATCGCCGGGCAGGACCTGAACTCCGGGAATAAAAAACTCACACTCGCTCTGCTGTGGCAGCTGATGAGGAGGTACACACTGAATATCCTGGAGGATCTGGGCGATGGGCAGAAGGTGACAGATGACACCATTGTCACATGGGTCAACAGCACACTGACCCAGGCTGAAAAAGGCACCATTTCTGGCTTTAAGGACGGGGCCATCAGTACCAGCATGCCAGTTCTGGATCTTATTGATGCCATCCAACCTGGATCCATCCGCTATGACCTGCTGAAGAGCACCGACCTGACGGACGAGGAGAAGCTCAACAACGCAAAGTACGCTATCTCCATGGCGAGGAAGATAGGGGCGCGGGTGTATGCCCTGCCTGAGGACCTCGTGGAGGTCAAGCCCAAGATGGTGATGACTGTATTCGCCTGTCTCATGGCTCGTGGCATGAAGAGGGTGTGAGGTCACCGTTGCCCAGGGCAACCCCTCCCTCCTCTCGTCTTAGCCACACCCTCATCTTTCTGTGTCAATCACAGCCTGGCTCCGGCCACAGGAAGTCTGCaacacagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtcccaTTCCCTCTTTACCCCTGCCAGGGATTCACACATGGGcaccaaaaataaaacacacacacacacacacacaatcactgtgCACAAATATGCACATGCTCACACTCAAATCTGAAATttgacttttcatttttttttttttaaactcatttttatattttcattgttCAAATTAAAATTGAATTTTCTGATCTAGAGTTATCTGTTTCCTGTGTTTTGGGTCTATTAAAACTCaatttaatttgaataatttttcACCTTGTAGTTTTTGCCAGCATTGCTATTTGGTGTGTTACTCATACATAATTGTCTATGATATGAAGCGACTCTTGTCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001589	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR039959	Family	Fimbrin/Plastin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19961	FIMBRIN/PLASTIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005884	Cellular Component	actin filament	Interproscan
GO:0032432	Cellular Component	actin filament bundle	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0051017	Biological Process	actin filament bundle assembly	Interproscan
GO:0051639	Biological Process	actin filament network formation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-