Gene detail

Detailed information of SKAU_T00427180 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00427180	SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA	JAINUF010000029.1	407956	439410	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00427180

CTGCAAGGGAGGTTCTGTGTGTGTCGCGGCGAACTGACACGTGTGGACGGGGCAGATCCGGGTTCGCaaaatacacacattttaaagggaaatattaatttttttattactttttattcAGACTTTGCAATCAAGAACACTGTTATTCAAAATCGGCAAAGATGGGACTCGGAGAAGGACGGGATCAGTATGAGCTGGCCGCCACATCGGAGCAGGGTGGGAAGAAGTCAAAGTccaagaagaaggagaaggacaTGGATGAGCTGAAGAAAGAAGTGGATCTGGATGACCATAAACTTACCCTGGATGAGCTTAACCGCAAATACGGCACAGATCTGACCAGGGGTCTAACAGTCGCTCGTGCTGCAGAGATCCTGGTCCGGGACGGACCGAACGCcctgacccctccccccaccaccccagaATGGGTCAAGTTCTGTAAGCAGATGTTCGGCGGGTTCTCCATGCTGCTCTGGACAGGAGCCTTGCTCTGCTTCCTGGCATACGGCATCCAGGCTGCCATGGAGGATGAGCCAGTCAAAGATAATCTGTACCTGGGGGTGGTGCTTTCTGCTGTCGTTATCGTCACTGGCTGCTTCTCCTACTACCAAGAAGCCAAGAGCTCCAAGATCATGGACTCCTTCAAGAACCTCGTCCCCCAGCAAGCCCTGGTGATCCGTGACGGTGAGAAGAACTGCATCAATGCTGAGGAGGTTGTGGTGGGAGATCTGGTGGAAGTGAAGGGAGGAGACCGGATCCCTGCTGATCTGCGCGTCGTCTCTGCACACGGCTGCAAGGTGGATAACTCCTCCCTGACTGGAGAATCTGAACCTCAGTCTCGGACCCCCGACTTCTCCAATGAAAACCCCTTGGAGACCAGGAACATCGCCTTCTTCTCCACTAACTGTGTTGAAGGCACTGCCCGTGGCGTGGTGATCAACACCGGCGACCGCACGGTGATGGGGCGAATCGCCACGCTGGCCTCTGGTTTGGAAGTGGGACGCACACCCATCTCCATCGAGATTGAGCACTTCATCCACATCATCACGGGCGTGGCTATCTTCCTGGGCGTGTCTTTCTTCATCCTCTCACTAATATTAGGGTACACCTGGCTGGAGGCCGTCATCTTCCTCATCGGAATCATCGTCGCCAACGTGCCCGAGGGTCTCCTGGCCACTGTTACTGTATGTCTGACCCTCACCGCTAAGCGCATGGCTAAGAAGAACTGCCTGGTGAAGAACCTGGAAGCCGTGGAGACCCTGggctccacctccaccatctgcTCCGACAAGACCGGCACCCTGACCCAGAACCGCATGACCGTGGCCCACATGTGGTTCGACAACCAGATCCACGAGGCCGACACCACGGAGAACCAGAGCGGAACCTCGTTCGACAGAAGCTCCGCTACCTGGGCGGCCCTGGCTCGTGTGGCCGGCCTCTGCAACCGAGCCGTCTTCCTGGCCGAGCAGAGCAATGTGCCCATCCTGAAGAGAGACGTTGCTGGAGATGCCTCAGAGTCCGCTCTGCTGAAGTGCATTGAGCTGTGCTGTGGCTCTGTGAAGGACATGAGAGAGCAGTACCCCAAGGACGCAGAAATCCCCTTCAACTCCACTAACAAGTACCAGCTCTCCATCCACAAGAACCCCCAAATCCACCGACCCCAAGCACCTCCTGGTGATGAAAGGAGCACCAGAGAGGATCCTGGATCGCTGCTCCACCATCCTGATCCAGGGCAAAGAGCAGCACTTAGACGATGAGATGAAGGACGCCTTCCAGAACGCCTACATGGAGCTGGGAGGCCTGGGAGAGAGAGTTCTGGGATTCTGTCATTTCCCTCTCCCTGATGACCAGTTTGCAGAGGGCTTCCAGTTTGACACTGAAGAGGTCAACTTTCCCACCGAGAATCTGTGCTTCGTGGGGCTCATGTCCATGATCGACCCGCCCCGTGCAGCTGTGCCCGACGCTGTGGGCAAGTGCAGGAGCGCTGGAATTAAGGTTATCATGGTAACTGGAGATCATCCTATCACTGCCAAGGCCATCGCTAAGGGTGTGGGCATCATCTCCGAGGGCAACGAGACGGTGGAAGACATCGCGGCTCGGCTGAACATCCCCGTTCATGAAGTAAACCCCAGGGATGCCAAAGCCTGTGTGGTCCATGGTGGGGACCTGAAGGACTTGAGTGCGGAGCAGCTGGACGACATTCTAAAGCACCACACAGAGATTGTGTTCGCCAGAACCTCGCCCCAGCAGAAGCTCATCATCGTAGAGGGCTGCCAGAGACAAGGTGCCATCGTGGCTGTGACAGGCGATGGTGTAAACGACTCCCCCGCTCTGAAGAAGGCAGACATTGGTGTTGCTATGGGCATCGCTGGCTCTGACGTCTCCAAGCAAGCCGCTGACATGATCCTCCTGGACGACAACTTTGCCTCAATCGTGACAGGAGTGGAAGAAGGCCGTCTGATCTTCGATAACTTGAAGAAGTCCATTGCCTACACCCTGACCAGCAACATTCCAGAAATTACCCCCTTCCTCTTCTTCATCATCGCCAACATCCCCCTTCCCCTGGGCACCGTCACCATCCTCTGTATTGACTTGGGCACTGACATGGTTCCTGCTATTTCTCTGGCTTATGAAGCGGCTGAGAGTGACATCATGAAGAGACAGCCCAGAAACCCAAAAACAGACAAGCTGGTGAACGAGAGGCTAATCAGCATCGCCTACGGTCAGATCGGAATGATCCAGGCGCTGGCGGGATTCTTCACCTACTTTGTCATCCTGGCGGAGAACGGGTTCCTGCCATCCACGCTGCTGGGGATCCGTGTGAAATGGGACAACAAGAACCTCAACGACCTGGAGGACAGCTACGGCCAGCAGTGGACCTATGAGCAGAGAAAGATTGTGGAGTTTACCTGCCACACTGCCTTCTTTACCAGTATTGTGGTCGTGCAATGGGCAGACGTGATCATCTGCAAAACCAGGAGGAACTCTGTCTTCCAGCAGGGCATGAAGAATAAAATCCTCATCTTTGGACTGTTTGAAGAAACGGCCCTGGCGGCCTTCCTGTCTTACTGCCCGGGAATGGACGTGGCCCTCAGAATGTACCCTCTCAAaCCCAGCTGGTGGTTCTGCGCCTTCCCGTACTCCCTCCTCATCTTCATCTATGATGAAATCCGAAAACTCATCATCCGCCGCAGCCCAGGAGGTTGGGTGGAGCGCGAGACGTACTACTGAAGCATCCGCTCGCGTCACACAGTCCTTTTGCATGGTTGTCTTGCTGCTCGGAAAATTTTAACCTCAGTAACTTCTGGATGTGTTTTTATATAGAGAATGCCTGAGACACAACAACTGAGGTCGTGAACCAAGAGATTGTGTGCCTTTGTTCTGGAGCAGGACaaattttatacatgtttttaagaGTGTAATATAATAAACTCTCAGTCCGGTCCGATTCGAGTctggtataatatatatattttcttttttttgtactggGAGATGGACTATGTTCTGGTTCATTAGCCCTTTCTGCATGCTCCATGTTCAGGGGTAGCCTGACTGACTCCCGTCATGCAGTAACCCAAAGTTTGGTTTTTGCCGAAATATAGTCATCTGTTACAAACTATGAAATGTTGCCAGTTGCACTTGCTGTGATGAAAGTATGCTCTAGCCTTCCACAACACAGACTTTGTTTTCCTTACTGTCGTAGGTTTTTTTTTGCTCTTGATACAAGGTAAACTGAACTGTAAAAAGTTTGAAAACCTGCAATAAAACACTCCCAAAATCCcaagag

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00122	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00690	Cation_ATPase_N	Cation transporter/ATPase, N-terminus	Domain	Interproscan
PF13246	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001757	Family	P-type ATPase	Interproscan
IPR004014	Domain	Cation-transporting P-type ATPase, N-terminal	Interproscan
IPR008250	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR018303	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR023298	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR023299	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR050510	Family	Cation transport ATPase (P-type)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43294	SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0005215	Molecular Function	transporter activity	Interproscan
GO:0005391	Molecular Function	P-type sodium:potassium-exchanging transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006883	Biological Process	intracellular sodium ion homeostasis	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0019829	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0030007	Biological Process	intracellular potassium ion homeostasis	Interproscan
GO:0036376	Biological Process	sodium ion export across plasma membrane	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan
GO:1990573	Biological Process	potassium ion import across plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-