Gene detail

Detailed information of SKAU_T00424610 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00424610	ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	JAINUF010000025.1	6122555	6148722	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00424610

GTGCACATCTCGCTGCAGCCCTTCAGTTCGCCGGGCACGGTTTGTGAAATGCTAAGCATGTGCGATTACGTCATGTATGTGTTGCTTTCCAAATGCACGTTCCTTTTTTTCCATTCATAGTTCTGTGCAGACTTACAGCGAGGACGGTCCGGAGCCCAGACGCAAATTGGCACCGTGAGAATATTGGAGCATACGCTGTATGGGTCGCTTCGGCAGAGAATATAGGCAGCCTGGCGCGCGCAAGAGTACAAAATAGGGTTCTGTTGCAGAATGCATCATAGCGAAAAgtgtaacttttatttttccagtttttttctgTGTGATTGTTTGCTTCGCAATCTTGAAGAGAAACTGTCTTCCTAAACAGCGCTGTGCTTGCCTGTAACCGCGCAAACAATTAATGCCCAGCTTAATAATGAACGTATATGAACGGATCGAAGTTATTTTTctacttgatttttttttctcgtgCTGTTCTACGGATGAACATTAGTCTGCTATGGGGAAAGTCTGCTGTCAACATGAGTTTGGACACTGAGGATGCTGCGAATTTATGGAGCAATGGTTCTTCGGAACTGTTAAATGGGACGTCGGTATATGCCAATAACTCAAACGTTACCTCGAGGAATAACAGCGAACTCGTTCCTTTGGACCTTGCCCGGGCGGTGCCGCTGGGTATCGTTCTAGGGGCTTTCATCGTGTTCGCAATCGTGGGAAACATCCTTGTCATTCTCTCCGTGGTGTGCAATAGGCATCTGCGAACCCCTACTAACTATTTCATTATCAACTTGGCCATTGCTGACCTGTTGCTGGGTACCACCGTGCTTCCCGTGTCCGCCACCCTGGAGATTCTCAACTACTGGGTGTTTGGGAAGATTTTCTGTGACATTTGGGCAGCAGTGGATGTGCTGTGCTGCACTGCATCGATAATGAGTCTGTGTGTGATATCCATAGACCGCTACATCGGGGTGAGCTACCCGCTGCAGTACCCCAGCATCGTGACAGAGAAACGGGCATTGTTGGCAATGCTAGGGGTATGGGTTCTGTCCTTGGTCATCTCCATTGGACCTCTTCTCGGGTGGAAACAGGAGACGCCGCCTGAAGACACAGTTTGTTTAATCACCGAGGAACCCTTTTACGCGCTGTTCTCGTCCCTGGGATCCTTCTACATACCTCTGGTCGTAATCCTAGCCATGTACTGTCGGGTGTACATTGTCGCCAAACGGACCACTAAGAATTTGGAGGACGGGGTAATGAGGGAGAGGATGAATTCTAACGAGCTCACGCTCAGGATCCACAAGGGCTCGCAGCTGCACGAGGACGGCGGAGGCGCGGGCAAAAGCCGGGGGCAACACTCGAGGAGCTCGCTCACGGTCAAACTACTTAAGTTCTCGCGGGAGAAGAAGGCTGCGAAAACTCTAGGTGTCGTGGTGGGCATGTTTACCCTCTGCTGGCTGCCGTTCTTCCTGGCGTTGCCCATAGGATCGTTTAACGTCAGCCTGCGTCCGCCTGACACCCTCTTCAAAGTGATATTCTGGCTGGGCTACTTCAACAGCTGCCTGAACCCCATCATCTACCCCTGCTACAGCCGCGAGTTCAAGCTGGCCTTCATCCGCATCCTCAAGTGCCAGTGGCGGCGCAGGAAACGCCCAGGCTTTCGGGCCTACAACTGCAGGAGCTCCAACTTCAGCAACTCCGGCCGCTCGCGCAAGGACTCCTCCGACAACAACTCGGGCTGCCTGAACGGAAGCCAGCGGACGCTGTCCTCCGCCAGCCCGAGCCCCAGCTACTTGAGCAAGACCTCGCGGGCCGGCCTGGAGCTGGAGCCCTACCACAGCTGGGGACCCCGATTCTCCCTGCCCGGGAGCGCCTCCGACGGCCATCAGGGGCTCCACAGGGGAGGCGTACCGCCTGCCGCCGGCGAGTTTGGGTTGGGCGTGGCGACGCGGGCGGGCCCGTCCGGCTTGCCGCTCTCCGGGGAGCGGAACAGACGCGGAGGCGCGGAACCGCCGGCGAGCAGCGCGGGGGCCGGCGGCAGGCCCATGTGACACTGCGCGACTGCCGACCGCGAGCGAGGCCGCGTCGTTGCTAATGACGATGTTCACGGGGCCTTACAGATGCAGGAATCGCTGATGTCATCGCTGATGTCATCAGCGGGCGGGGGGGGGCGTCGGTGCTTTCACCTTCAGTCCAAGTCCGTTTTACTGCACTGAACACTGACAGTGTCGGTCAAAGCCTCCAGGACTGCGGCAGGTGATAAATTGTATAAAGTATATTAATAAAGGCGCtgactcatgaatgtactcatCTTATGAGAAGAAGTATCATTCCTCCTCCTGGCGACGGAAAAATCGGAAAACATTCCGTGTTTATAGGTTGTCTTTCTTTAGTTTAGTCACGTGACGTCTTCATTGTGTGCGTTCCTTTCAGACGTAATCGAACGCAGATAAAGTCGGTTCAGAAGCGTAAAGGACAGAGGCCTTTTTTTCCTCAAATCTACCAGCCTCAGGAGTCAGTTTTGTTCTCGTTACATTGAAGAACAATCTATACTTTACAATCACATCCATCACATCCCATTGGAGGTGTGTAGTGCAGCGTATGGCCGCTGAATTCAGAGACTGCATCAGTGTGATGAATCTGAGGACCTCAAGGAGTCGGCAGACATCTGCATTAAATGTGTTGTATGTAGAAGGGATTGAACAGAGATTTTATAAACACCCTTTACATGAACTTTTTCCCTCGGTACTCACGCCTTGTAGAAACGCCCAGAAAAgctggtttctgtgtgtgtgtgtgtcattgagTAAACTCGGCGTGTGAAAAGAACACTTGTGTCAGTTCAAGGAAGGAATTTGTTGCAATCTTTCAGCATCAAAGTCCAAACAAAAAGatttcagagtgaaaataacgTTCAATAGACTGACTCAGAAATCAATGAGAAATTTGGAGCCTTTTTTCTCGATCTGCTCATCGTTTTCTTTATAAGAAAGGGAAAGGCCACGAGCGCTCTTTCTCATAAACATCGTTCCCCTGGAAAACTTCTGGAGTCCTACAGGCTACGGCTTTTTAAACAACGATGAGAGTTTGTTGCTTTGTGCGGCTTGTCTCCATCCAGTCACCACACAAGGCCTCCAGACTTCAAGCCTAACCACTGGGAGATTTGCTCGCTGTATATTTTGATCATTTTGACTGTGTGGTCGTGTGGTTTCCCAGTGAAGCCAGCTCAAGAGGACCTGGGCATGACGTGACTGATCGAGGGATAGCCCCCTCCGAGtgtttcaaccaatcacagagaGGCAATGGAGCATCGGGATTGGACGAGGGCAGAGAGAGTTCAGACATGCTGTGTAGATCACTGCATTTTCCATCTGATCCTCCCACATTCATTGTAAATACACATAACAAAACATAGAGTTTATGTATTTTATGGTGTGTACTGAAGTTAGGCACATAAATTATTCTAGTTTATTATCATTtgtctttcatttcattttggtGGGAGATATTGGTAATAAAACAAATTTATGGATGTTATTTATTGTCATCTAGTTCTTTTCTGATAGATGTGCACAAGGTAGTCTTTCCTTGTAAGAGAACTGACTTTTTACTTAAATGATTGTTGCCTcagtaagaaaaataaatatgac

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR001115	Family	Alpha 1B adrenoceptor	Interproscan
IPR002233	Family	Adrenoceptor family	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24248	ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001996	Biological Process	positive regulation of heart rate by epinephrine-norepinephrine	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0004935	Molecular Function	adrenergic receptor activity	Interproscan
GO:0004937	Molecular Function	alpha1-adrenergic receptor activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006937	Biological Process	regulation of muscle contraction	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0007200	Biological Process	phospholipase C-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0007204	Biological Process	positive regulation of cytosolic calcium ion concentration	Interproscan
GO:0007267	Biological Process	cell-cell signaling	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0019229	Biological Process	regulation of vasoconstriction	Interproscan
GO:0043410	Biological Process	positive regulation of MAPK cascade	Interproscan
GO:0055117	Biological Process	regulation of cardiac muscle contraction	Interproscan
GO:0071880	Biological Process	adenylate cyclase-activating adrenergic receptor signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-