Gene detail

Detailed information of SKAU_T00424210 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00424210	PROTEIN CBG26694	JAINUF010000025.1	4836033	4839111	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00424210

ATGCATGCAGGGCAAACTAAAGGACAGTTTCAAAAACAGAGCAAAGCTAGGCAAGAGACACAAAGTGGAGCAGAGCTCAAGTCATGCCCAAAATGTGGGAAAACTCCTCCCCATGCTAAATTTCAGTGCCCAGCTAAAAATGCAGATTGCCACAACTGTGGTAAAAGAGGCCACTATGGCAGGGTGTGCAAATCAGAAAAGACAGTGAGTGCAGTCACTGAAGACAGCACAGTGTTCCTGGGCATAGTGGATGCAGGCGAGGAGCCATGGACTGTCGACGTAGGGGTGAGGCACACAAAAGTGGCTTTCAAAATAGACACAGGAGCCGATGTTACTGTGATGCCGGAGCAGGTGTACAGGGAAATAGCACAAGGAAGCACACGCAGCCTTACTCCAGGGAAGAAAGCGCTGTTTGGGCCTGGAACTCCGCTCACCGTAGTGGGGGTGGCTAGGGAAGTGCTGCAATGCGGTGACAGGAGCACCACTGAGGACATATATGTTTTGAAGCACCTGAAGGTGGCGCTGCTGAGCAGACCAGCTTCAGTGAGACTCAGGTTAGTGGCTAGAGTAGACAGCATTGACCTAGAGACTGTAAAGCAAATTTACCCCAAGTTGTGTAGAGGGTTAGGCTTAATACAGCAAAAGTACACGATAAAGCTGAATCCAGACACCAAGCCAGTCTCCCTTAAAGTGCCACGGCGTGTCCCACTGCCATTGATGGGAAAAGTGAAGAAGGAGCTGGAGCGCATTGAACAGCTCGGTGTCATCAGCCGCATAGAGGAGCCAACAGAGTGGTGTTCAGGCATGGTAGTTGCACCAAAGAAGTCTGGCGAAATCCGCATCTGCGTTGACCTCTCACCCCTCAACAACGCGGTGTGCAGAGAAAAGTTTGTCCTTCCCTCAGTTGACCAGACCCTGGGCATGCCGTCAGACGCAGTGATCTTCTCCAAGCTTGACGCCAACATGGGATTCTGGCAGGTCCCGTTGTCCCAAGAATGTGCACACTACACCACTTTCATAACACCATTTTGGCGTTATTATTTTAACCGTTTCCCGTTCGGCATTGCCTCTGCCCCAGAGCATTTTCAGAACCGGATGGTGACGGAGGTGACTGCAGGCCTTGAGGGAGTCGTCTGCCACATGGACGACATCCTCATTTGGGGTTGGACACAGGCAGAGCATGATGCCAGGGTGCACGGTCCTGGAGAGAGCACAGAAGGCGGGCGtcacactgaacacagccaaAAGCTTCCTAGGCATGGTGAACCAGCTAGGTTCATACCCAACCTGGCGGAGAAGGATAAGGCGCTGAGAGACCTGCTGTCGAAAAAGAACCAGTGGTTCTGGGGCCCAGACCAGCAGAAAGCCTTTACAAGCCTCAAACATGAACTGTCCTCCACGCCAGTGCTGCAGCTGTACGACCCCAACAAAGACCTGAAGATATCGGCGGACGCGTCATCGTACGGTCTGGGCGCCGTAATCCCGCAAAAGCACCAGGATGTGTGGTCTCCAGTGGCGTATGCATCCAGGTCGCTGACGAGCACGGAGCAACGCTACGCACAAGTGGAAAAGGAGGCACTTGCCCTGACGTGGGCATGTGAGCGATTTCGTGATTTTATCATCGGTCTACACTTCAAACTTGAAACGGACCATAAACCACTCGTGAGCCTGCTGGGAGGTCAAGCGCTCGACTCGCTCCCACCAAGAATACAGAGGTTCAGGATGCGGCTCATGAGATACTCGTATATCATCACACATGTCCCAGGGAAGACCCTCACAACAGCAGACACACTGTCACGAGCACCGCTGAAGCAGGGCGGAGCCACAGCAGGTGACGGGCTGATGGAGGAGACGAATATCTATGTGGACAGTGTAATGGAAAACTTGCCCGCAAGCGACGCTTACCTGACAGAGCTGCGGCAGCAGTTGAGCACTGACAGTGTGTGCTCACAGGTAATGAAGTACTGCACAGAGGGCTGGCCGGATCGCAACAGACTGGAGGCGATGCCGACCCCCTACCGCGCGCTGCTTGCGTACAGAGCTACGCCACTGAGCAACGGCTATAGCCCGGCCCAGTTGCTCATGGGACGCCGTCTGCGTACCACCCTTCCCACCTTTCCTGCAGCGTTGGAGCCGGACATCCCGGACCTGCGGAAAGTCCAGcgcagggaaagagagaggaggtggaTGGATGTGAGTAACTACAATCAAAGACACGGGGGAAGGAATCGTTCCAATTTGGCACCAGGAGATCAAGTGTGGATCACCCACACCAAGACTACTGGCACGGTGACATCTGCACATCCTACGCCGAGATCGTATCTGGTCAACGGACCACAGGGTACAGGAGGAACAGGCATCATCTAG

Transcript

SKAU_T00424210

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-