Gene detail

Detailed information of SKAU_T00418390 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00418390	B-CELL RECEPTOR CD22	CM056399.1	5198939	5215191	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00418390

ATGATCTCTCTCTGGTTTATGGGCCTGCTTCTGATTGGTGACCGTGTTCGCGGTTTCAGTGCGATGACCGGCAACGAAGGCTCCTGCGTGACGATCCGTATTCTCCACGACAAACACAAGATCACGGAACCGAGATATATCACCTGGTTGAAGAACGCCAAGTGGAATGACTCTGCAAAGGATTTCAAGGGCACAGTGGTGTACAGCCTTGAAGCCAACAGACCCGCTGAGAGCAAATTTAAAGACAGAGTGTCCGCCACGGGTCCCGATGCTACTGGAACGGTCTACGAATTGACCATCCATAATTTGACACAGGAGGACAGGGGAAGCTACTCAGTTAGATATTACGGGGTTCGTCGAAATGTGTGGTCGACCGAGGCAGTGATTCTTGAGGTCAAGAAGAATCCTTGCAAGGTCCACGTGACGGGGCCGGAGCTGGTCCAGATGGGGGCGAAAGTGAGCTTGCGGTGTTCCACCTGGGGTCACTGTGGGGACAGTCCCGAATGGCGTAGCTCAGGCCGGGGTGAAATCGACCTTGTCCCGAAATCCGACGACCAAGGCGAGAAAACGGCCCTGCTGATCTTCACCGCCGAATGGTCAGACGACGGGGCGACGTTCTCCTGCTGGCCGCCGCAGAGCACGGAGGCCTGCGCCTCCAGGAACGTCACGCTGACCGTGGAATATTCACCAAGAGATACCAGGGGGGAAGTAGATTCTGACATCATAAAGGAAGGAGGTGATGTCACCTTCACCTGCCACAGCAGAGGAAACCCCAGGCCCAGCTTTTCCTGGTTTAAAGTGGGCGGGGTTATACCTACCCAGGGCGGAGAGTGGAAATTACCCGGTGTCCAAATTGAACATGCCGGGAGTTACATCTGCCACGCTACAAACAAACACGGAGCGCAAAAATCAACGGCCGTTACACTAGATGTCACATATGACCCAAAAGGGGTCAGTATATCGCCAAGCGTGACTCTAGACCAGGTCACTGAAGGAGATGCGGTCAACCTCACCTGCATCGTCCAGAGCAGCAATCCAAAAAACCTGTCCTACTCCTGGTACAAAAACGACGCCCTCCTGGGCGAGACTGGCCAAGTGCTCCGTTTCAGAGCCGTGCGACCCAAGGACAGGGGCCCCTACAGCTGCAGAGCCTCCAACTCTGAGGGTTGGGGAGATTCCCCAATGGTTCCAGTCAGCGTTTCCTATGGACCAATAAGCACAAAGATTAAGACCAGCTGTTGTGAGAAGGGGGTGAAGGCCGGCCAGAGCCTGACGCTCTCCTGCGAGGCCGACGCCCACCCTCAGCCAAACAGGTACACCTGGTTTCATGCGGTCACACCGACAGctggagggaggacacaaagctGGACTGAGGTTCGAGCGCGTTTTGACGGATGGACTGACCAGCGAGCCCTGAGCTGGGAGCATATCCGTGTTAGCGATGCCGGGGAATACATGTGCCGGGCCGCGAACAAAATCGCTGCTCGAAACTCGTCCTCGCTCCGCGTAGACGTGCTCTACCGGCCGACAGGCCTCAACCTGTCCATGGCTCCCACGGTAACGGAGTCCAGCCTCGTCACCGTCCGCTGCACGGCGGAGAGCTTCCCGCTTTCCCTCCTCAACCTGACCTGGCCCGTGCCCTCCGATCTCCTCTCCGACCTCACCCCGCAGACCCCGAACCCCAAGCCCCTCCCACGACGCTCCACGATCCACTCAGCAAGCGGCGATCTCGTCGCCTCCTTCACTGCGTCCATCAAAGACGCGGGCCTGTATACCTGCCAGGCCAGGAACTCCGAGGGGCAGGACGAAGTCACGCGGGAACTGGTAGTGCACTATGCTCCCAGAGAAGTCCGTGCGACGGCGAATCCAAGAGGCGAGGTGACCGAAAAGACGAACGTGGAGCTCACCTGCGAGGCCCGGTCCAACCCCAACGTGACCGAGCACACCTGGTTTAGGCTAAGGGGCGGGGAGGCGAGGGAGGCGGGCCCCGGCCCGGTTCTGACCCTCAGGGACCTGTCGGCGGAAGACACCGGGCTGTACTTCTGCAGGGCCCGAAACGTAATCGGGGAAGGGAACTCCAGCGCCATTAATGTCACAGTAATATATGGTCCCAAAAAACCTGTGATCATTCACAATATGACCAGCAGATGGCAGTCTGTCAAAGAAAGTGCGGTGGCCTTGTCGTGCAGCAGTCAGAGCTATCCTCCTATAGCGATGTATAAGTGGTACATACTGAAGGACATCAACGCAGAAAGATTCGTCCGAGCCGAACAGAATCTCACGATAGGCTCTGAGGAGGGAGGGATCTATTACTGCTTTGTGAAAAACAGGATCTCAAGCAGCAGCTCGGACAAGATTGAGATACGCTTCTACCGAAGCTCCGCCCACATTCTCATTATGGCAAGTATGTGCTTCCTCTTGATCATCTTCATCTttgccatcatcatcatcgtcctGGTCTACAGaaaaagaagaaaatccaCCCAGCGGAGTCTTGGAAATGGCTCTTGGAATGGCACATGGGAGACATTGGTAATGGACGGGATGGGCGACACGCAACAGAGCAGGGAGACTCTGTCAGGAGTGGTGGCCCCGCCCCCTAGAGCCGCCAGCCAATCAGCATGA

Transcript

SKAU_T00418390

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07686	V-set	Immunoglobulin V-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013106	Domain	Immunoglobulin V-set domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46958	B-CELL RECEPTOR CD22	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0019903	Molecular Function	protein phosphatase binding	Interproscan
GO:0030888	Biological Process	regulation of B cell proliferation	Interproscan
GO:0033691	Molecular Function	sialic acid binding	Interproscan
GO:0042113	Biological Process	B cell activation	Interproscan
GO:0042609	Molecular Function	CD4 receptor binding	Interproscan
GO:0050859	Biological Process	negative regulation of B cell receptor signaling pathway	Interproscan
GO:0055037	Cellular Component	recycling endosome	Interproscan
GO:0070062	Cellular Component	extracellular exosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-