Gene detail

Detailed information of SKAU_T00416890 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00416890	GUANYLATE BINDING PROTEIN	CM056399.1	1305772	1319601	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00416890

ATGGCGTCTGGATCTTCCCTCCTGGAAGATGAGCTCTCCTGTCGTGTGTGCTCTAATATCTTCAGGGATCCTGTTGTCCTGAATTGCAGTCACAGCTTCTGTAAGGCCTGTCTGCAGCAGGACTGGGAACAGAAGGAATCTCGGGAGTGCCCAGTTTGCCGGAGAAGATCTTCTATGGAACTACCTAGGCCTAATATGCCTCTGCCTCTGCGACCAGTTCAGGAGGCTGCTCTCACGTATGAGagcATCATGTCAAGTGGCACCGTTACAATGGCTGAGCCAGTCTGTCTGATCGAAAACGACAAGGACGGGAACCTGCGCGTCGTGCCGCAGGCTGTAGAGATCCTGAACCAGATTGATCAGCTTGTGGTGGTTGTGGCAGTCGTGGGTCTGTACCGCTCCGGGAAATCATACCTGATGAACAAGCTAGCTGGGAAAAGAAAGGGATTTGCCCTGGGAGCCACCATCCAGTCAAACACCAAGGGCATATGGATGTGGTGCATTCCTCACCCCAAAAAAGCGGACCACACCCTGGTGTTGTTGGACACTGAAGGGCTGGGGGATGTGGAGAAGGGAGATACGAAGAACGACAACTGGGTCTTTTCTCTGGCAGTCCTCCTGAGCAGCACTCTGGTGTACAACAGTATCGGGACCATCGACAATGATGCTCTACAGCGTCTTCACTATGTGACGGAACTGACGGAACACATTAAGGTGAAATCGCAGGCCAATGACGAGGACGAATCCACTGAGTTTATGCGCTTCTTTCCCTCCTTTGTCTGGACAGTTCGGGATTTCACCTTAGAGCTAGAGTATGATGGGAAGCAGATAACCGCTGACCAATACCTGGACAATGCTCTCAAGCTGAAGTGTGGCCATGGGAAGCAAGTGATGGCCTACAACCTTCCACGCAACTGCCTCCGGAACTATTTCCCTACGCGGAAGTGCTTTGTGTTCGACCGTCCTACCAGTGCAGAGAAGATGAAGCACTTGGATTGCCTGGTCGATGAAGACTTGGAACCTTCCTTCGTGCATCAAGCCAGGACCTTCTATGATTACGTCTTAAGTGAAACGAAGACCAAAACCATGAAAGGGGGCTACAATATAACTGGCAGAATGTTGGGGAGCCTTGCAAAGATATACTTGGATGCTATCTGCAGTGGCCATATTCCCTGCCTGGAAAATGCAGTTGTAGCTCTGGCCCAGATTGAGAACTCTAACGCAGTAGCTGAGGCTGTGAAGTTCTACAAGGAGAATATCGCCAATTTAGTTGCCTTCCCGACCGAGACACAGGCCGAGCTGTCAGACATACATGGCAAAGTAGAGGAAAGGGCTGTGAAGATCTTCATGGACCGCTGCTTAAAGGATGAGGATCATAAATGCCAAATTGAGCTAATGAAACTGCTGCAGACAGAGCATAAGGCAATCTGTGAGAAGAATGTTATTGAATCGAAGAAGGCTTGTGAGTCCATCATCAAACGCATATTCAGGCCTCTGGAGGAAAATATTGCATCTGGGAAATACATGACAGTCGGAGGATACCAGCAATACTGCAAGGATTTAGAGAACTTCATCTCGAAATACAGATCAGCCGGGGGAAAAGGAATAAAGGGTGAGGAAAGTCTAAAGGAATATCGGGCCAAGAACAAATTTGTTGGGCAAGCCATAATGACTGCTGACCGATCTCTCAGTGAAGCACAGCGGAAGGAAGAAGAAATTACGGCAAGATTGGAGGCCACAGAGCAAGCGAGACGTGCTGAGGAGGAGCAGAGAAAGATCTTGGAGAAGCAGATGAAGGACCAGGAGCGAACCTTCATAGAGAACATGAAACAGCTGGAGAATAAGATGGAGGAGGACAGGAAGAATGCTGCAAAGGAGTTTGAAATGACCCTGAACAGCAAACTGAAGGAACAGAACGAGCTTATCAAGCAAGGCCTTGACAAGCAGGCAAAGCTCCTGCAGGCTGGAATTGATTCCCTCAAGGAGGAAAAGGCCAAAAATACAGAGTCCTCTTCATTTTTTGCTGATGCTTTGGATACCGTGGGACAAGCAGCCACCGTATTTTTGCCAGGGATGGGAAGGCTAGCAGGGATTGGTATCTCTGCTTTTTCACGCTTGTTTAAATAA

Transcript

SKAU_T00416890

gtgaactgaactgaactgagaaatgaacggatcttttcagtaagtgattcagttcagttcgttcacccaaaagattcgttcttttgaacgaatcgttcgcgaacgacacaacactagcttgcgcgtctggtgggttccagtcGTTAGTTACATCGGGGGTCTTTTAACATGATTTCAGcatatatatttcataaatttAGGAACATCTGAAAATATTGACGGAGAAACATACACTGAGAAAAATAACAGAGATGTGAGATTAGTTTTAAAGAAAAAAGTCTGTTTGTGTAACAGCAGTAAGTAAAAGTGAAACTAAACTACGGATTTACCAGAAACCATTACTGAGCTCGGAACAGACAGAGTCAGAATGGCGTCTGGATCTTCCCTCCTGGAAGATGAGCTCTCCTGTCGTGTGTGCTCTAATATCTTCAGGGATCCTGTTGTCCTGAATTGCAGTCACAGCTTCTGTAAGGCCTGTCTGCAGCAGGACTGGGAACAGAAGGAATCTCGGGAGTGCCCAGTTTGCCGGAGAAGATCTTCTATGGAACTACCTAGGCCTAATATGCCTCTGCCTCTGCGACCAGTTCAGGAGGCTGCTCTCACGTATGAGagcATCATGTCAAGTGGCACCGTTACAATGGCTGAGCCAGTCTGTCTGATCGAAAACGACAAGGACGGGAACCTGCGCGTCGTGCCGCAGGCTGTAGAGATCCTGAACCAGATTGATCAGCTTGTGGTGGTTGTGGCAGTCGTGGGTCTGTACCGCTCCGGGAAATCATACCTGATGAACAAGCTAGCTGGGAAAAGAAAGGGATTTGCCCTGGGAGCCACCATCCAGTCAAACACCAAGGGCATATGGATGTGGTGCATTCCTCACCCCAAAAAAGCGGACCACACCCTGGTGTTGTTGGACACTGAAGGGCTGGGGGATGTGGAGAAGGGAGATACGAAGAACGACAACTGGGTCTTTTCTCTGGCAGTCCTCCTGAGCAGCACTCTGGTGTACAACAGTATCGGGACCATCGACAATGATGCTCTACAGCGTCTTCACTATGTGACGGAACTGACGGAACACATTAAGGTGAAATCGCAGGCCAATGACGAGGACGAATCCACTGAGTTTATGCGCTTCTTTCCCTCCTTTGTCTGGACAGTTCGGGATTTCACCTTAGAGCTAGAGTATGATGGGAAGCAGATAACCGCTGACCAATACCTGGACAATGCTCTCAAGCTGAAGTGTGGCCATGGGAAGCAAGTGATGGCCTACAACCTTCCACGCAACTGCCTCCGGAACTATTTCCCTACGCGGAAGTGCTTTGTGTTCGACCGTCCTACCAGTGCAGAGAAGATGAAGCACTTGGATTGCCTGGTCGATGAAGACTTGGAACCTTCCTTCGTGCATCAAGCCAGGACCTTCTATGATTACGTCTTAAGTGAAACGAAGACCAAAACCATGAAAGGGGGCTACAATATAACTGGCAGAATGTTGGGGAGCCTTGCAAAGATATACTTGGATGCTATCTGCAGTGGCCATATTCCCTGCCTGGAAAATGCAGTTGTAGCTCTGGCCCAGATTGAGAACTCTAACGCAGTAGCTGAGGCTGTGAAGTTCTACAAGGAGAATATCGCCAATTTAGTTGCCTTCCCGACCGAGACACAGGCCGAGCTGTCAGACATACATGGCAAAGTAGAGGAAAGGGCTGTGAAGATCTTCATGGACCGCTGCTTAAAGGATGAGGATCATAAATGCCAAATTGAGCTAATGAAACTGCTGCAGACAGAGCATAAGGCAATCTGTGAGAAGAATGTTATTGAATCGAAGAAGGCTTGTGAGTCCATCATCAAACGCATATTCAGGCCTCTGGAGGAAAATATTGCATCTGGGAAATACATGACAGTCGGAGGATACCAGCAATACTGCAAGGATTTAGAGAACTTCATCTCGAAATACAGATCAGCCGGGGGAAAAGGAATAAAGGGTGAGGAAAGTCTAAAGGAATATCGGGCCAAGAACAAATTTGTTGGGCAAGCCATAATGACTGCTGACCGATCTCTCAGTGAAGCACAGCGGAAGGAAGAAGAAATTACGGCAAGATTGGAGGCCACAGAGCAAGCGAGACGTGCTGAGGAGGAGCAGAGAAAGATCTTGGAGAAGCAGATGAAGGACCAGGAGCGAACCTTCATAGAGAACATGAAACAGCTGGAGAATAAGATGGAGGAGGACAGGAAGAATGCTGCAAAGGAGTTTGAAATGACCCTGAACAGCAAACTGAAGGAACAGAACGAGCTTATCAAGCAAGGCCTTGACAAGCAGGCAAAGCTCCTGCAGGCTGGAATTGATTCCCTCAAGGAGGAAAAGGCCAAAAATACAGAGTCCTCTTCATTTTTTGCTGATGCTTTGGATACCGTGGGACAAGCAGCCACCGTATTTTTGCCAGGGATGGGAAGGCTAGCAGGGATTGGTATCTCTGCTTTTTCACGCTTGTTTAAATAAGAGGCAGAATGAGAATAGCTGGGTGGTGGTAATGGTTCTGCGATACAGTAACCTGTCATTACTGCTGTGAGATGCACAGCAATAAACACTGtcacatttttaacaaaatcaaagCAGCCAAAACGTTTCGTTTGAACGTCTCTCTTCCCTCTGCTtctttttgctaaatgcttctttatttgaagcatatggctgttaagctccaaagttgaccaacaatgcaaataatagtaacaacaactttatttatatagcacttttttaaacactggattataaagtgctgtacaaaataaaagaacaaaaaacaacatgatagagatgaaatgcaagaaacaaataaaaataaatataattaaatataacacaaagtagtaaaatacaattaaatgtaataaaaggctcaatgtatataaaaataatcaattaaaagcaagtccataaaagtgagttttcaattgggatttaaaagatgagatggccattttgtctggaaggctgttccagattataggggccctgacagcaaaagccacatcacctttggatttcaacctaaactttggaacagtgagtagagctctgccatcggacctaaggctgcactgctggtgcagggataaaaagcttggagatataagaaggggctacaacacgaagggctttgtatgttatcagtaaaatcttgcaaaatttgacagcgggacaagcaacaccagcttactgaagcagctgccagaatcagacagaggggacctgatgccccaccatcacatgtcctcacaggatggaggaaaatatgttagTGAAAATTGccaatataatacacactgcttataatgtagccaaagaagagcagcccttcacccgatttacaaccctacatggtttaatctacagaatctaactttccaactgctacgcgtcccACAAGGCTTatgtacggtgcaaacgcacgcacacgcacgggcattgtgtaattgttgttaataagcgaataaatcacaagaattgtccaaaactctgtcggttttatttatttttttaataggcctttatttgcagtttcggacaagtaagtttagcctcccgacaagtaaaaagtctgagctgaggatcaaaaagttaatgtcaagc

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02263	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan
PF02841	GBP_C	Guanylate-binding protein, C-terminal domain	Domain	Interproscan
PF15227	zf-C3HC4_4	zinc finger of C3HC4-type, RING	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR003191	Domain	Guanylate-binding protein/Atlastin, C-terminal	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR015894	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030386	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan
IPR036543	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan
IPR037684	Domain	Guanylate-binding protein, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-