Gene detail

Detailed information of SKAU_T00413530 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00413530	PROTEIN LIN-7 HOMOLOG	CM056397.1	21844414	21915796	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00413530

GGGCACTCCAGCCAGTAGAGGGAAGTGCATTGTAAAATCAGAGTCCATCGTCGGCATACGGTGAGGGGAGTAGGCTACGCCGTATTTAGCCTATCTTTGGTTGGAGACAGGGTGGATTTCACTAGAAAAAGATTTCTGTTTTGAGCTTTTTACCAAGTGGTGACAGTGGACTTTACGCTGAAAATGGCTTCGTTGGCTGAACCTGTCAGGCTGGAAAGAGACATCTCTCGGGCCATCGAGCTGTTGGACAAGCTACAGAGGACTGGTGAGGTTCCACCCCAGAAACTCCAGGCACTACAGAGGGTCCTCCAGAGTGAATTCTGCAATGCTGTGCGAGAGGTTTACGAACATGTGTATGAGACAGTGGACATTAATAGCAGCCCAGAGGTCAGAGCGAATGCTACTGCTaagGCCACAGTGGCAGCGTTCGCAGCAAGCGAAGGGCACTCCCACCCCCGGGTCGTGGAACTTCCCAAGACTGAGGAGGGCCTGGGCTTCAACATCATGGGCGGAAAGGAGCAAAACTCCCCCATCTACATTTCCCGCATAATCCCTGGCGGAATCGCGGATCGGCACGGCAGCCTGAAGAGGGGGGACCAGCTTCTATCGGTCAACGGAGTGAGCGTGGAGGGCGAGCATCATGAGAAGGCTGTGGAGCTCCTGAAGGCggcgcagggcacggtcaaactGGTGGTGAGGTACACCCCCAAAGTATTGGAGGAGATGGAGTCCCGCTTCGAGAAGATGAGGTCCGCCAAACGCCGGCAACAGAATAGCTATCCCCAGTAGCGTGCCTCACTCCGGCCAACGGATCACTCCCACCCCTTTTCCTCTCAGATTCCTCCTCAGGTCTCTCTTCCTCCACTCACTCTACCTTTCACTCTTCTTCTTTGCCCCTTTTCAACACCTTGGCATGTTATTCTATAACTGTCTCAACACAAAAGAATATCTTTTCCAATAATGCACCTTCTTcacatattatgtgcattctgGATATCTGTTGCCAATGTGCTATGGAGTATGTACTTGGGaatttaataataattgtttCTTGGAATTATATGAATCTTGAGAATGAGTTTTAAATTAAGGCTCAGTACAGCATTGCTAGATACTTAAggggaaaatgtatttttaatcaaTGCTCTGAAATGTATTCAAACAACAATAACTAAAAAGAAAGCTGAGATTCAGCACTTTGTACAATCtagttaaaaaaacatttagtcagagtatatatacatatatatagttCATATGGCAGAATTTCACTGAATGTTACTAAGGAACTGAAGATTGATCAGAATTTTTAACAGTTTTTTCAAATATGTTTAATGATTAGTGTGCTTTTTAACCTTGAAGTTTGCAGCTGTCCCTTTCTAGATAGATTGGCGAGATAGACCTGTACAGTTTCTGTTGTAATCGTACGCTGTAGAATGTCTTCATGTTCAATTTTATTTTCCACATAAGTGCATGTGTTGTGTTTGTGGAGTTTCATTTCCATATCCACAACTATAAGCGTTTCTTCACTCTCAAAATGACTCCTAAAAGGAAGACAAAATTAATGCTATTAGGTAATTGATTCCATCAAACGCAAGGAAGTAGGATCTGAAAGCTAAAAGTGCTTTATCAGGGCCATCTTTCTGTGCTTCAGCAGTGCTGTGCTGAGGTTCAAGAGAGCAAACAAATCCTTTTCGTTGAGGAACAGTGGACTGATATTTCAGTCCTACTATAGATGGTTTCATCACTTAGTTTACTGACACTATGAGTGCTTGCTTATAAATCCTGTGATTCTGCTGAAAGGGAGGAATGAACTGATGCtaagaaaaataaatgtaatcaaCATCTGAGTTCAGGAGGTGGGACTTCTTGAACATAACTACATCCTGCTCATTATGTTGCATTTTTTAAATGGATGAACTATTTAGATCAGATTGGTAATTGGATCCTGGACATTTAGCGTTTATTTAGAATTGTCTTCCCAACAAAGCTGCATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF02828	L27	L27 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478	Domain	PDZ domain	Interproscan
IPR004172	Domain	L27 domain	Interproscan
IPR014775	Domain	L27 domain, C-terminal	Interproscan
IPR017365	Family	Protein lin-7	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036892	Homologous_superfamily	L27 domain superfamily	Interproscan
IPR051109	Family	Membrane-associated multiprotein complex regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14063	PROTEIN LIN-7 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005911	Cellular Component	cell-cell junction	Interproscan
GO:0007269	Biological Process	neurotransmitter secretion	Interproscan
GO:0016323	Cellular Component	basolateral plasma membrane	Interproscan
GO:0045199	Biological Process	maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0045202	Cellular Component	synapse	Interproscan
GO:0097016	Molecular Function	L27 domain binding	Interproscan
GO:0097025	Cellular Component	MPP7-DLG1-LIN7 complex	Interproscan
GO:1903361	Biological Process	protein localization to basolateral plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-