Gene detail

Detailed information of SKAU_T00407590 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00407590	CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN	CM056396.1	26044597	26072518	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00407590

TGGACAGCTGTTCGTGTTATCATAGGAGACCTGGCGCATTCGCACACTACCTCCCATCGAAATACACACATTCTTAAAGTGGACTCTTATGGCATGTTGCTTTCTGACATCGTTAAACCTCCGAGTATTAATTCACGTACCATATATGATCTGACTTAGAAACATGAGTTAATCATGGATAAGATGCGGTACGGTGATGTAGGAGTGGTTCTAGGTTTCCACCCACCGATGTAAATGCAGAGTTAAGGTGGATAATGTGGTGTATTACGGTGATTTAGGAGAGGTTCTGCGTTTCCACCCCACGACGTAAATGCATCTAAGTCCCTGTGCTTTAACACTTCCTTACTGGAGTTTGTATAGAAAATACAATGTCGTGAAATCGTGCCGAAAAGACGCAGACTGCTCGAGAGAatattaataacaacaacaagAAACGACACTGGTAGACAGCAGAGGATGTCCCGCCTTCCCCTATTTCTCATTGGCTGGGAAAGACGCCACTCGTGGTACTTCCTGAGTAGGAGGGCGGTACTTCAGGCAGCGCTGAGGTGAAGGGCGAACAGAATGGCCGCTTTATTCAGAGCTAGAGGGTCTCGGACCTTGTTACGGAGGAGCAAAGACCATGTCGACCTCGGCCAGGTGTGCCGGACCATGGCCTCTAAGACACCGGTGGGGTTCATCGGTTTGGGAAACATGGGGATCCCCATGGCTCTGAATCTTCTGAAGAGTGGGTACCCCATCATCGCCACTGACGTCTTCCCTGAGTCCGGCAAGGAACTGCAGGACCAGGGAGCACAGATCCTGGACTCTCCAGCGGAAGTGGCGGATAAGGCCGACCGGATCATCACCATGCTGCCaaAGATAAAGAAGGGTACACTGCTGATTGATTCCAGTACGATAGATCCGTCCGTTGCCAAGGAGATGGCGTTGGCCTCTGAGAAGATGGGGCAGTGTTTATGGATGCACCAGTGTCAGGCGCAGATTGAGAGCCATGGATTGTCCATGGGTTCCAGTTTGATAGGCTCCGCCCACAGCAGCTCTTGCTCCTCCCCCCAGTTTCCATCTCTGCACTCTGAGGCCAAACAGAGGCTGAAGGCCGCCCTCGGGCACCACTCGGCCACGCCCACAGCCAGAGCGGCTACAATCACCCGCAGAGCCAGGCGACCCAACCGCACCCCGCACTGCCCCCCACAGACCCCCCCACACACGCCCCAACATTCCGGAACACACTCACAGGTGTTGGCAGGTGCACAGTCAGGGGGGCGGCGCCGACGGGGGAGAGATGACGATCCAGACGACAGGAGACAGAAGTTTCTGGAGAGAAACCGCGCAGCCGCCACACGCTGCCGGCAGAAGAGGAAGGTGTGGGTGGTCTCACTGGAGAAGAAGGCAGAAGAGCTGAGTCACACCAACCTGCAGCTACAGaatgaggtcaCCCAGCTGAAGACAGAGGTGACCCAGTTGAAGCACCTGCTGGTGGCCCATAGAGATTGTCCCGTCACCACCAGGCAGAAAGAAGCTCGAGGATACCACAGTGCAGAAACCAGCCCTTCAGATAGCTCCACCCTGTCATGTTCTCAACAGCAGGTGCTCCAGCACAACAGCATCAGCACCTCCACATGCAGCAGGGGGCAACAGTGTGCACGGGCCACCTTCACACACTGCCATTAACCCCATGCTGTAGAAACCCATCTGCTCTTTTCTGCATCTCATTGGCTGTttatagggggggggggcaggagcctTGTGTTTACTCCTGTGCTTAGACTTGGTCAGATACAGACCCAGGTGACTGGACAATTCTGGTCCCTCGGCCACCACTTCCTGTCACACTTGCATCACTTCCTGTTCATGTGCATAGGATCACCATTATCTTTCTCATTCCCGGTCTTTCAGAGTGTGATCCTGATATATACTGTATTACATTAATCTATGACATTACTAACATGTGAGGAGGGACTGTTTGTGACACCAATTAGTGTTTGTTGCGCTAGTGTCTATGACATCATTAATGAGCCCCCATTCTGTTCCAAAGGGAGGCATAAACCAGGTCCTCTGTGGGGTCTCTTTCTCCCtcgtcttcctctccctctctcacactctcccctctctctctctcactctccctctctctctctcactctccctctctcacactctccctctccctctctctccctctccctctccctctccctctcacacactctccctctctctctcacacactctccctctctctctcactctccctctccctctcacacactctccctctccctctcacaccactctccctctctctctctcacacactctccctctctctcacacacttctctcctctctctctcacactctccctctctctcacacacactctccctctctcacacacactctccctctctctctcacacactctccctctctctctcacacactctccctctctctctcac

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	TF_bZIP
Transcription Factors Family	TF_bZIP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00170	bZIP_1	bZIP transcription factor	Coiled-coil	Interproscan
PF03446	NAD_binding_2	NAD binding domain of 6-phosphogluconate dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002204	Conserved_site	3-hydroxyisobutyrate dehydrogenase-related, conserved site	Interproscan
IPR004827	Domain	Basic-leucine zipper domain	Interproscan
IPR006115	Domain	6-phosphogluconate dehydrogenase, NADP-binding	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR046347	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR051027	Family	Basic leucine zipper (bZIP) transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19304	CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0035497	Molecular Function	cAMP response element binding	Interproscan
GO:0050661	Molecular Function	NADP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-