Gene detail

Detailed information of SKAU_T00407160 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00407160	SLIT HOMOLOG	CM056396.1	25142278	25172229	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00407160

Transcript

SKAU_T00407160

ATGTGGCCATTCAAGACTTTGCCTGTGACGATGGTAATGATGAGAACAGCTGCTCTCCCGCTGGCCCGCTGCCCGGCCGAGTGTACCTGCCTGGACACCGTGGTGACCGAGCTGTATCTGGACGGAAACCAGTTCACCCAGGTTCCAGTGGAGCTCTCTAATTACCGGCACTTAACACTCATTGATCTAAGTAACAACCAGATAAGCACCTTGTCCAACCAAAGCTTCAGTAACATGTCTGAGCTGCTTACACTAATTTTAAGCTACAATCGACTGCGGTGCATTCCTGTGAAAGCCTTCGATGGATTGAAGTCTCTTCGGCTGCTGTCCCTTCATGGGAACGACATCGCTGTGATTCCAGAGGGAGCCTTCCAGGACCTCTCCGCCCTTTCTCACCTAGCCCTGGGAGCTAACCCTCTGTACTGCGACTGTCACATGCACTGGCTCTCGGAGTGGGTGAAATCCGGGTACAAGGAGCCCGGCATCGCCCGATGCGCCGGGCCGGGGGAAATGACCGACAAGCTGCTCCTCACCACGCCCTCCAAAAAGTTCACCTGTCAAGGGCCTGTGGATGTGAATATCCTCTCCAAGTGTAATCCCTGCCTCTCGAACCCTTGTAAAAACGACGGCACCTGCAACAACGACCCGGTGGACTTCTACAGATGCACCTGCCCGTATGGGTTCAAGGGCCAGGACTGTGACGTTCCCATCCACGCCTGCATCAGTAACCCCTGTGAGAACGGAGGAACCTGCCATTTGAAAGAGGGGGAAGAGAACAGCTTCTGgtgtgtgtgtgctgacgGCTTTGAGGGCGAGGCCTGCGAAGTCAACATCGACGACTGCGACGACAACGACTGCGAGAACAACTCCACCTGTATCGACGGAATCAACAACTACACCTGCCTGTGCGCCCCAGAATACACAGGTGAGCTTTGCGAGGAGAAGCTGGATTTCTGCGCCCCGGAGCTGAACCCCTGCCAACACGACTCCAAGTGCATCCTAACGCCCACGGGATACAAGTGTGAGTGTACGCCGGGCTACGTGGGGGAACAGTGCGACGTGGACTTTGACGACTGCCAGGAGAATAAGTGTAAAAACGGAGCTCAGTGCATCGACGCTGTGAACGGCTACACCTGCGTCTGCCCCGAAGGTTACAGCGGCCTGTTCTGTGAGTTCTCCCCACCGATGGTCCTCCCTCGCACCAGCCCGTGCGATAACCACGACTGCCAGAACGGGGCGCAGTGCTTCGTCTTGGACACGGACCCCGAGTGCCGCTGCCTGCAGGGTTACCACGGCGACAAGTGCCAGAACCTCATCAGCGTCAACTTCGTGGACCATGAGTCCTACCTCCAGATCCCCTCCAGTCTTATCAGCTCGCAGGCCAACATATCTCTGCAGATCGCCACCGATGAAGACAATGGAATTCTGCTGTACAAAGGAGACATCGACCACATCGCCGTGGAGCTCTACAGGGGTAGACTGCGCGTTAGCTACGATACCGGATCCTACCCACCTTCAGCTATTTACAGTGTGGAGACCATCAACGACGGGAGCTTCCATGTAGTGGAGCTTGTGGCAGCGGAACagactctctcgctctctatcgATGGCGGCAGCCCCAAGTCCATCAGCACCCTGTCCAAGCAGTCCACGCTGAGCATCGACTCTCCGCTATACGTCGGAGGCATGCCGGGGAAAGCCACCGTGGCGGCCTTGCGCCAGAGCGGCGGGGGAGGCCGGAACGGCACCAGCTTCCACGGATGCATCCGGAACCTGGTGATCGACGGCGAGCTGCAGGACCTGTCACGTTTCCAGCCCCGCGCGGGCATCCTGCCCGGGTGCGAGCCCTGCCAGAAGAGGGTGTGTGCCCACGGCTCCTGCCACGCCACCGGCCGCTCCAGCTTCACCTGCCAATGTGAGGGCGGCTGGACCGGGACGCTGTGCGACCAGCAGGCCAACGACCCATGCCAGGGCAACAAGTGTGTACAGGGAACCTGCCTGCCCATCAACGCCTTCTCCTACAGCTGCAGGTGCCAACCGGGCTACACGGGCGTCCTGtgtgaggatgaggaagaggtcTTCAACCCCTGCCAGTCCATCAGGTGCAAGCACGGGAAGTGCCGCTTGTCCGGCCTGGGCAAGGCCTACTGCGAGTGCAACAGTGGCTTCACCGGCGACGGCTGTGACAGAGAAATTGCTTGTCGAGGAGAACGGGTCCGAGATAACTACCAGAAACAGCAAGGGTACGCGGCGTGCCAGACGACCGAAAAGGTCTCGCGGTTAGAGTGCCGGGGGGGGCTGCGACGGGGCCCAGTGTTGCGGGCCCCTCAGGAGTAAGCGCCGGAAATACACCTTCGAGTGCACCGACGGCTCGTCCTTCGTGGAGGAGGTAGAGAAAGTTGTGAAGTGTGGCTGTACAAAATGTCcttcgtaaaaaaaaaatttaaataaatagataataaatacaaataaataataaataaaaaaatatataggtttttttttttgttacggtTACGTGTCCCTTTtttaaggaaaaaaaagaaaaaaatacaaaaaaacaaaatcataCCTTTTGGCAGTTGCTGGACTTAAATGATGCTTCCATAGTGGAAATGTTGAATTATATTGTAAAATACAGAACaatacttattttttattatgaagcggagaaaaaaaagacaaaaaacaagaGAGTTTAACTATTTTCTTCATTCGCCGTATGTCCGGGAATAAACGacgttggattttttttttgttgctttttttctGAAGAAGAACTGAACTGAGCTCATTGGTGAAtgaagaaatgaaaaaaaaccaTTTGGCTGGTCActgtttctcattttttattttattttattttttttaatgttatacgTCAGAAGACTCTTGGGAGGGGGCGGAATATGTTGAGGTTAGTTGTTAAGATTAGGATCTGGTAAAGTAGAACGGGAAACAAAACAAAtctaaacaaacaaaagcaaaagAAAACCGCCATCACCAGCAGGAAGATTTGAGATACTAAAGCGCGGTCTCCAGGACGACGGCGCGGGGTTGGTTCCACGACACAAAACGGACAAACTAAAACCTACAGGAGTGCCGTGCCTGAACGATCCGCTGAAGGTGATGAACTGCACACAGATGTGATTACGTCACCCTTTTTATTCGCCCAAGTCCAACTTGTAGCCATGTACAATAGCAGAACCCATGTTCAATAGCGGAACCCATGTACAATAGTAGTACCCATGTACAATAGCAGAACCCATGTTCAATAGCGGAACCCATGTACAATAGTAGTACCCATGTACAATAGCAGAACCCATGTTCAATAGCAGAACCCATGTACAATAGCAGAACCCATGTACAATAGCGGAACCCATGTCCAGTAGAAGAACCCATGTCCAATAGCAGAACCCATGTCCAATGGTAGTACCCATGTACAATAGCAGTACCCATGTCCAATAGAGGAACCCATGTCCAATAGCAGAACCCATGTACAATAGCACAACCTTAAATATTAGTAAACCTTGTTTCCAGTATTAATGCAGTGTAATTTAAatgttgtgggggtgggggggggggggggggggggggtagggggagggcTGGGAGAAACATAGGTTAATGATATATGATTAGTAATTTGGTTAAACGATACAACTTGTCTTTTTTTTACAATGCCTCTGCCTGTTGGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00560	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001791	Domain	Laminin G domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR051355	Family	Notch and Slit guidance protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45836	SLIT HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0008201	Molecular Function	heparin binding	Interproscan
GO:0030308	Biological Process	negative regulation of cell growth	Interproscan
GO:0031290	Biological Process	retinal ganglion cell axon guidance	Interproscan
GO:0048495	Molecular Function	Roundabout binding	Interproscan
GO:0050919	Biological Process	negative chemotaxis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-