Gene detail

Detailed information of SKAU_T00406300 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00406300	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71	CM056396.1	24079528	24123020	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00406300

ATGAAGAAGAGAGGGGTGAAGACTCCCAAAGACAGACGGACCTCTGGGATGGAGGAGGACCCCTCAAGAGTAGCCGGACAAAATGTTCAGGACAAGTTACCAGTTGAAAACATAGaTGATTATCAGTGCTCTGGCAGCCTAGATGTAGATTTTCCAGAAGTCTGCGCTCTGCTGGGCATGACAGAAATCCCTGCAGTAACCCCACGAAACAAGACCACCGCCTCACAGAACACAGAGCAAAGCACCATGGAGGGCAGCCAATCGAATGTGAGCAACGGCGAAGAGACCACGCACTGGTGCCCTAAGCCCCGCCTTCAGGTGGAGCTGGACAACGACGAGGACCCACGCAGTACCAGAGAGGTCAGAGTGCTCGGGTGGAAGGTTGACGACAGAGTCGCCAAGGCACTGAACAAGACACTGCCATGCCTGGGCAACCTGCAGCGGCTTCAtcTGTGGCAGGTGGGGCTGACTGATCGAActctgtcctccctgaaaaacaCAGTGTCGCTGTGCAACAGTCTCAGgACAGTGGCTTTGGAAGGAACGCCTCTCCCAGAACAGTGTTTCCACCTGTTGATGGCAGAAGACAGCAAGCTCGTTCACCTCTCGCTGCGGAATAACCGGATTGGAGAGGAGGGGGCCCGGCTGATTGGAGGAGCCCTGTCCACCGCGCGCGGGACGGCGAACAGGAGCCTTCTGTCCCTCAACCTCACCTTCAACTCCATCGGCGACTCTGGCGCCGAGCACATCTCCAAGGGTTTGCGGCTCAACCGCACTTTGCTGTGTCTCTCTCTGGGGTTCAATCACATCGGGGACGATGGCGCTGGTTATCTTGCGGAGGTGCTGGCCCCGTTCTCCTTGAGTCACGAGGAGATTGTGGAGAGGAGGAAGTTGCTGGGCCTGAAGGATCCTCTGATCCTGAGCTCAGACTCCAACCACCCCCCCTCCGTCCCTAGCAGCTCCTCACTGGACCACGCCGTGGCCAAGGGGAGCAAGTCTCCGTCTAAGAAGAAGacTCTGCCCAAGAAAGAGGAAAAGCAGCCAACCAATcaggggggaggagctgcaggaaAGAAGGACGACCAAAAGAATTCTAAAAAAGgtaccgACAGCAAGACTCCCCGGAGCCGAGGGCTGAAGTCGGGAGGCAAAGAGCGGAGCCCGTCTGTGTTAGACACGGAGACGAGCCCAGCGGGAAATCGCGTTTGCTGCAGGGTGACCAGCGGCTCGCAGAACAAGACAGCTGATGTCACAGAGACAGTGAGCCCCCTGCTGGACACGGAGGCACAGCACGGCCAGGGACGCGTCCTGCTGCCAGGCAACAACGTCCTCACCTCACTCAACCTATCAGGCAACAGGCTGACGGAGCGGTCGCTGCGTTTATTCCTGAAGGCGCTGAAGGAGCAGGACGAGGGCGGCCTCCTGCGCCTTTCCCTCTCCAGAAACCGCTTCCCGCTCCTGAACTGTGAAACTTACCTGAGGATTCAAGAAGTGATGAAGCGCAAAGATCCTCTAAACAAAAACATTCCTACAGTGGACGGCTACGTACTCGCCAACATGCCCCTCGCTAAAGACCTGTTGCACCCGTCccctgaggaggagaagaggaggcACAAGAAGAAGCGTCTCGTGCAGAGCCCAAACTCCTACTTCATGGACGTCAAGTGTCCAGgatgcTACAAGATCACCACGGTGTTCAGCCACGCGCAGACtgttgtgctgtgtgtgggcTGCTCCACTGTGCTGTGCCAGCCCACCGGTGGGAAGGCGCGCCTTACAGAAGGATGCTCATTCAGGAGAAAGCAGCATTAGCTGCTCGTCAGCGCCCCCTGTTGGAAGGGAGGGGAGAGGCGTGGTTGGACCCAGGGATCTCCGGCGATGTTCCCGCCCCGGACGCCGAACGATCCGGACGACTTGCACTCTGAACGCTTGAAGGGAGGGGGAAGCTGATTCAGACTACCTGAACTGAATAATCAACCTGAACATTCACC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01667	Ribosomal_S27e	Ribosomal protein S27	Family	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000592	Family	Small ribosomal subunit protein eS27	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR011332	Homologous_superfamily	Zinc-binding ribosomal protein	Interproscan
IPR023407	Homologous_superfamily	Small ribosomal subunit protein eS27, zinc-binding domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR053040	Family	Leucine-rich repeat-containing protein 71	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46984	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-