Gene detail

Detailed information of SKAU_T00405920 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00405920	DNA-DIRECTED RNA POLYMERASE	CM056396.1	23455178	23460596	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00405920

ATGAAAGCCACCGATGTATCTTTCCAATATCGAAACGAGTCCAAATATATCGTAATGTCGTGCTTCAGTGGAGATCCTAATTTCTGCGCGGAATGCGGGAGTATTCTACCTCTACCGGGGTTGAAGGATACTGTCACTTGTGTCCGCTGTAACTACAGTGTCTCTGTCCGCGAATTTGCAGGCCATGTGATCACCTCTTCTGTGGTCTTTAATCCTGTGGAATCATCCTCTATTGCCAAGGAAACCGAGGAGTCAGAACTAAAGGGACCAGTGATTGACAAGCGCTGTTCTCGCTGTAATAAAGAAGGGATGGTTTATCACACCAGACAGATGAGGTCTGCAGATGAAGGCCAGACTGTCTTCTACACATGTATACACTGCAGGTATCAAGAAAAAGAAGATTCCTGAGAAGTGCAAGATGAACATCCTTTCTGCCCAGAAGAAGTTCCCTTTTGTACCTAAAGCTGCCATGGTAACCAGTGATTGACACTGGTAGCTAGTTATGCTAACAAGGTGTCAGAGAACACACACACTATGTACACACACTCCTTACAAGCTCGCCTCATGCACACtatgtacacacactcattacaAGCTCGCTTCATGCACACACTATGTGTACACACTCATTACAAGCTTGCCTCATGAATACATAACCAGGGGCTGTGTTATAAACTGTGGCATAAATCTCCATATGATGCATCATAGACTAATAAGAAACTGGGACTTCACCCTGTCAATGTTTGGACGTTCTTGTCCAATCACAAAATGGGCCCTGTAACCATAGAGACAGAAAACGGCCATTTCCCTTTTCCAGTCAGATGAATGTCAAACAGTATTTTCAAGGTTATGCAATAAGTAGTGAATTAGTTATTTTGTAAATTATTTGAGGCTTAAATAAAGTTTGTTTTCAAATCTACCGTAATTGTCCACAGACGACGACTTCTGCAGCTCAGCAAGGATATTAATGTGGGGAAATCTCGAGCCAGCCACACAAACTCAATAAATGTTGTGAATGATGAAACACAATGAGGAATTGCCTGTTTATTTAGTTCAAACACAGGTCAAGGAGCCCTGTGATGGACTTATGGACTGTCCTGTATTCCTGCTTCTtgcctaatgcatgctgggataggctccagcccccctgcaaccagaggtgtaaaatccagtttCAGAGTAAAATTTCTCCCCTGTATTTTCTTACAATCACTTGTATTAGCTAATTAACACAATTCAACAAccagaaggtagaactaattagtgaagtcagTTGGCTGAGtaaatgggtggaagaaacacatggcaggacttttactttctaacccctggattttacacctctggctgcatccctgtccaggaataagcgggttagataatagaTGGATGAACACAGGTTAAGGAGAAGCTAGACCTATTGTTTTAATAGTGTAGGGCGGTTTCAATGAAGAACATTGAATGTTTACCAATGTGAGGTATTAAAGAACCATACTTTCCAACAAGTTCAAATGGTGGGCAAGACCTTGCATCAGAATTACCTTTGTTGTACTTTTGAGTTTGTTTACATTTccaattttaaaggaattttgaATCTCCAATTTTTGCTGGACCACAAGGGCCAGTATATGAGTCAATGACTGCATTTGTATCCAATTTACCACATTCCCTTCCATTTTTGTCtaccctcgagggagctatcttgtgacacaatttgctacgtgcagcaagcaaacttaaaaggtgctctgcaagaaacaaacaaaaacggaactgaaccgcccttgcaacataTAGGAAGCGCAACaccagagttgaaatgtgaccacccactttttccatgtggagcattgcattgtgggattcccttctagctggaagcttgcattttatacccttggtggaagggaggataaacaagggagcgagggaatataattactccctcccctttcttgcATTGGacccgaatcccacttggtgtggctgccatatttcatccttgCAATTTAGGGATTCCCCCTTGAAACAACGGAAGGAATCGACAGGAGGAAAGCATACAATTCGGATCTGAACCATAGATCTGAACGCAGCCACTGAGTGATTTACTGATTTCCCATTGCTGAAATGTGTGTTTGGGTGGTGTCCAGTAGATGGCAGTATTGCATGAGTGTTTTACTGATTCCCCATTGTTGAAATGTGTATGTTTGGGTGGTGTCCAGTAGATGGCAGTATTGCATGAGTGTTTTACTGATTCCCCATTGCTGAAATGTGTATGTTTGGGTGGTGTCCAGTAGATGGCAGTATTGTACACAGTATTGTATTGTCTTGCTTTAGTTTGTCAACGTacatgtatgtttttattttttggtttgcaaaacaaaaaacagaatgaAATGACAGATTCAACCCACAAACAAATACAACCACCAACCACCCCACTTCCACCATATCCCCCACATTGCTACCATCATATCCCCACATTGCTACCACCATATCCCCTACATTCCTAGCACCATATCCCCCACATTCCTACCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01096	TFIIS_C	Transcription factor S-II (TFIIS)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001222	Domain	Zinc finger, TFIIS-type	Interproscan
IPR012164	Family	DNA-directed RNA polymerase subunit/transcription factor S	Interproscan
IPR019761	Conserved_site	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	Interproscan
IPR034004	Domain	Pol I subunit A12, C-terminal zinc ribbon	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11239	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001054	Molecular Function	RNA polymerase I activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005736	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006363	Biological Process	termination of RNA polymerase I transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-