Gene detail

Detailed information of SKAU_T00404440 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00404440	NUCLEOLAR PROTEIN OF 40 KDA	CM056396.1	20519642	20529235	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00404440

GGTGAATATAAATGAATAGTCGAGAGTTTGAAGTGAATTCAAAACGCACCAGGATATTTTAGAAGAATTATGCCAAATGCATCCAGCTAGTTAACAACATAGCCTATGATTCGCATGCAACAGCAGAATGATGGATGGGTACCGGGGCAGGGAGCCGGTAAATCTGGAGGAACTACCGCAGCTTCACAGCATCATCCGGGGAGAGGTGGCGACTGTCACAGCATATGGAGCCTTTGTCAAAATCCCTGGGTGCAGGAAGCAAGGTCTTGTCCACAAGAGTGAGATGTCGTCCTGTCGTGTGGAGAATCCCTCTGAAATTGTGGATGTGGGTGAGAAAGTGTGGATAAAGGTCATTGGGAGAGAGatACAGGATGAAAAGGTTAAGCTTTCATTTTCAATGAAATCTGTCAATCAAGGGACGGGGACAGACCTGGATCCAAACAACGTGAACTTAGAgCAGGATGAGAGGAGGAGGCGACAGTTCAGAGACCACACGGGTCAGAGAATAACACTGGAGGCTGTTCTCAACACCACCTGCAAGAAGTGTGGTTGTAAAGGTCACTTTGCAAAAGACTGCTTCTCTCAGCCTGGCTTGCAGTACAGCCTGGTTccagatgaggaagaggaggtgaaGGAAGATGTTCCTAAACTGACTGTCCAGCAGTCACACAAGCGGAAGAAGGAGAAGAAGTCAAAGAAAAAGaggaagaagaaagagaagaagCAGAGCTCCTCAGACTCCGACTCGGACAGCAGCGACAGTGACGACGCGACGCCGGCCAAGAGAGAGCGCTCTTCCAGCGGGGCCGGGAGCAGGGAAgacaaaaagaagaagaagaagaaaaaacagaaacacaaGAGTCACAAGAAACGGGAATGAGGGGGAAAGGGACGgccacatctgtgtgtgtgtgcacgtgtttgtgtgtgtctgtctgtctctgtgtgagagtgaaagagagcAGTCATGCCGTCATTAGGCTTGGTTCCCGGCAGTTTCCTGCGTCTACAAGTGTTAAATTCCCCTGACATGCTGGAACCTACAATCTCTGTGATTGGCAGAGATCAGCAGGCGTGTTTGGACGCTGTTCTGTTCAGTACTGTGCAACGGACACTTTTGGATAACATGGTTATCCTTCTCTAGTAAGGTCCCTAACAAAACCCTTACCCCTGATTCAACAGAACCCTGAAATTTGACCAGCACAGACTCCCAGAACCTGATCCAAACATCACCCTTAAACCTGACCCAATCAGAACCCTGAAACCCGATTCAAACTACCCTTAAATTCGCCTTGTATGGGGCCCCTCAAACCTATCTCAAATGGAACCTTCAAGCATGCGTCAAACGGAACCCCTAACCTCAATCTGACAGAACCCAAAAACCTGACCCAATGAGAACCCAGTAACCTGACTCTGACAGAACCCATAAACCTTCCCCCGAATGCACCTTCAGAAAGCCTTTGATGAACCCTTtgtgatttctttttattttgttatgTATATTAAATGTGTGTCTAAAAACAagatctttctctctttctctctctacataTCTGACAGCTTGAATAGATTTATCTGTAGCATTTGAATGTTGATTGGAGAACAATGCCTTTAAAATTGGCAGCGGAGGTGAGCTTTCCTTGTTAAGCCCTTCCCTGTTGTACTGGAGCAAAGGTTGAACCGCAGTTTCCACAGCTCCTTCTGGGAAGGTCAGGCGTTGTGCCCCTTAAGCCAGGCCCCCATTGACCTTCCACCCGTTTGGCAGCTGGTCACCAGATACATGACACTGGTCTCTGTACCAGCTGCAAGAATGCGCTTAAATTAGAATaccagtctctttctctctctcgctctctcttttgtCTCTATTTCTATctctttatctctatctctcctcacctctctctcccccagaaAGTCTTTCACAcaaatttcacacacacacaatttacagcGCTCCTAGGCTAACAACAGGCTAACTCAATGGgtcactcacacactcagaaTTTCACACAATACCCAgaaacccacacccacacacataacaCCCAGGAACTCTCCCAACTCGCATACGCACACAAaccctctttctctttcacatGCTCCCATACAGAAGCCCCTCTCTTTGTCCATATATCACACagtcaccccctctctctccctctttctctctctctctcgcacacacacagtggtctcctctctctctgacgCACACAAAGCAACCACGTTTGTGTCTCATATACACTCGTTTATCCTCCTTATTTTCTCCACACGCAATAGCCCTCTGCCTTTCTCCTCATTTCTCACACAGCAacccctctctttctgtctcacacgctccctccctccctctcctgtaCGCTGCAGGCAGACAGCCTTGGGCGGTGTGTCTAACCCAATGCCCTGGCAGTCACAGGGTCAATACAGAGACTGGCGCGGCAGTACAGGGATCACTCATGCAAACGAGAGCGACGTGACCCTTTTCTGGTCTGGCAAACATACAAAACCAGCCGCCATTGATTTATCTTCACTTAACCAACTATAGGGTCTGTGTGCCATTAcatcacagccacacacacacatacttgtgcATTCCCAGACAGAAATAGCCTGGTTCAAGTGTTCAGTAGTGTGGCTATATGTGTACAGAATGGTCAAGTAGAACTGCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00575	S1	S1 RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR003029	Domain	S1 domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR047913	Domain	Zinc finger CCHC domain-containing protein 17, S1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15838	NUCLEOLAR PROTEIN OF 40 KDA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043489	Biological Process	RNA stabilization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-