Gene detail

Detailed information of SKAU_T00403970 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00403970	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3	CM056396.1	19807231	19821354	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00403970

TGTGCTATTGCCTGACCACAACAGGACCACATTCACCACAAAGAGAACCCCCTCTTCAGGTTACCACTGCGCATAGCGGTCAGCTGTTGTGTGACGTAGTTCCGGGAGTGCTCCATATTTACTGTAGGTAGGCTGAAGCCTCCCCTGCAATAAGTGCAGGCCAGCTCCTGCTGTAGCGAAGAAGCTTCCGGGCCACGATACCAGTTGTAAACATGGCGGAGGACCTGCTAGGAACGGTTGAGAGGCTCCAAGGAAGGATCTTGGAGAATCCAGAGCCTCGTAAGTTGCTGAAGGCGCTCAAAAGGCTGGGGGAGCTGCCCATGACAGTGGACATCCTGGTGGAGACTGGGATCGGGAAGTCTGTTAATTCTCTCCGGAAGCACGAGTTTGTTGGAGAGGCAGCAAAGACTCTGGTGGCCAGGTGGAAGAAGCTGGTCCCACAGTCTGTGGACAGACCGAGCAGTGGGAAGGAGGGGAGGAGTCACGCGCGTGGGTCCGAAGTGGGGCGCAGACAGGCCAGAGACCCCTCCCCAGAGGAACGTCCGCACATGCAACAGGAAGAGGAagCCCCCCTCACGGCCACACGGGGCAGGGGGGCATATCAGGAGGAGGAATACGAGAGCCCCCCCAGAGAGGAGGAGCCTCCACCCAGTCCCCCCCGCAAAAAGAACCGTCTCCCAAAACCGCACAAGGACCTGGGGCGGGAACAGGGTTCCCACGGCGACCGGGAGCCCGAACGGCGTCGTCGCCACGGCGACGGCGCCCAGGGGACCAGCGGCGGCAGCGAAGGGAAGAAGCGCAGGGCGGAGAGGGAGCAGCAGGACGGCGGCACGCACAGGTCCTCCAAACACAGCCGTCACACTGCCCCGAAAACAGACAAGAGAGGGGGGCCAGAGGGTAGGTCTCGGGAGCGCAGGGAATCGCCGCCTGACGCAGCTCGAGCGGGGGAGGACGAGGAGGATGAGGCATTCGAGACGCCCACCATGTCCTTCGAGTCCTTCCTCACCAAGGCTAACGGGACCCGGAGCAAACGGCCCCCTCACAACTCCACTCCCCAGGTCTCAGAGAAGCGCAGGAAGGTAGTAGATGTGGTGTCCACGCTTCCTGAAATCCCCCTGCCGGCAATCCAGCCTAACTACAGACCCCTGCCCTCCATCGACATCACCCCTTTGTCCCCACAGAGGCGTAAAGTTCCTGTGTCATGTGACGAGGAAGATGCTGGCTTCACTGGCCGGCGCCTCAACTCTAAAATGGTGGTCTACTCAGGCTCTAAGACCGTCTTCTTGCCCAAGATGATGAGTCTCTATGAACAGTGTATCAGGGTTCTGCAGAACAATATTGACTCGATCGATGAGGTAGGAGGCGTTCCATATGAAATTCTGGAGCCCGTTTTGGAGAGGTGCACCCCAGAGCAGCTCTACCGGATTGAGCAGTGTAACCAGTGTTTCATGGAGGACTCCGATGAGCTGTGGACGCGTCACTGCCAGAGGGATTTCAAGCGGGAGTCTCCGCAGGAGTACGAGTCGTGGCGGGAAATGTACCTGCGTCTCCACGACGAGAGGGAGGAGCGCCTGCGCATGCTCACCCAGAACATCAGCTCCGCCCACGCCAACCGCCCCAAAGgtcGGCAAGTGAAGATGGCCTTTGTGAACTCTGTGGCAAAGCCTCCACGTGACGTACGCCGGCGGCAGGAGAAATTTGGAACCACGAGTGGCGCATGTGGCACAGGATTAGCCGCCgctgcagctgctgctgctgccccaGTCAGAATCAGACCAGCCATCGCCTACAGCAGCCAGTCCTCCGAACCTGCCTCTTCAAGAGATAAACCACAGGTCAAAAAGATCGCCCCCATGATGGCCAAAACTATCAAAGCTTTCAAGAACAGGTTCTCCAGGCGATAGAGGAATGGCATgaatgagagaggagaggaagaaaGCGAGACTGTAGAAACAAAAGCTGTGTTTTTAAATGAACTGCACCACGGGAGCTGCAGACCCCTCCAATATGTCCCCCATTCTCTAAAGTACTCCTGACTTTCCCctgggattttaaaaaaaaaagaagaagaggaagaagaagaaacacaaacacacacacacatgcacacagagacacaaacacaggcacacagactgGACTTCTCTCTCTGGGCAGAGCTTGATACAACGAGTTGgcacggggggggagggggggtcgtgTGAGTGGAAGACGGAGAGAAGCACAAAAGGGAGAGggatgagtgtatgtgtgtaagagagagagagagcgagagacggaCCACCCTGCAGCTTCACTCTACTGTATTTATTTCTTGGTCCCTCTGCTGGCCTTTACATAGAAGCGGATCAAAATAGTAATTTTAATAGATTTTAATAAATGTTATATggacatttttaataaaatttacTCTTTGCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06881	Elongin_A	RNA polymerase II transcription factor SIII (Elongin) subunit A	Family	Interproscan
PF08711	Med26	TFIIS helical bundle-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR003617	Domain	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	Interproscan
IPR010684	Family	RNA polymerase II transcription factor SIII, subunit A	Interproscan
IPR017923	Domain	Transcription factor IIS, N-terminal	Interproscan
IPR035441	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR051870	Family	Elongin-A domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15141	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0070449	Cellular Component	elongin complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-