Gene detail

Detailed information of SKAU_T00403260 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00403260	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN	CM056396.1	18049214	18081654	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00403260

atggCCAAAGGAGAAGGAGCTGGAGAAGTAGCAACAagcttattaaaaaataaagcgGTGAGCCCCGATGAGGTCAGATTAGCGAAGCATGACGAGAAGGGCCGGTTGTCCGTGTGCAATAAGCTGTGCTACGCCGTCGGAGGGGCTCCCTACCAGATCACGGGATGTGCGCTGGGATTCTTCCTGCAGATATACCTTCTGGACGTAGCTCTGTTGGACCCCTTCTATGCCTCCATAATCCTGTTTGTAGGGCGAGCCTGGGATGCCGTGACAGATCCCACCATCGGGTTTCTCGTCAGCCGAAGCCCGTGGACCCCCCGCTTTGGCCGGATGTTGCCCTGGATTGTGCTGTCCACCCCATTTGCGGTGCTATCCTACTTCTTGATCTGGTACGTCCCTCCTTTCGAGCAAGGCAAGGTCATGTGGTATCTGGTCTTCTACTGCCTCTTCCAGACCCTTCAAACGTGCTTCCACGTGCCGTACTCCGCCCTCACCATGTTCATCAGCTCCGAGCAGAAGGAACGGGACTCCGCCACGGCCTACAGAATGACGGTGGAGGTGCTCGGCACGGTCATAGGCACGGCCATCCAGGGCCAGATCGTGGGCGGGGCAAACGCACCCTGTATCCCTGGGGACATGCCGCTTGTGAACGGGTCCAATTCCTCAGTGCTCCTGATGGGACCGGATGTCAACATCACCCAGCCACAGATTTCTCTAACTCAAACGAGAGAAGCTTACATGATTGCATCAGGTGTCATCTGCATCATGTACATCCTGTGCGCATGTATTCTCTTCTGTGGAGTGAGGGAACAGAAAGATACCAACCGCCTGAGCCACAAGCCCGAGCAGCCCATGTCGTTCTTCCAGGGCATGCGGCTCGTCATGGGCCACAAGCCGTACGCCAAGCTGGTGATGGGATTCCTCTTCACCTCATTGGCTTTCATGCTGCTGGAGGGAAACTTTGCGCTGTTCTGCAGTTATACCCTGGGCTTCAGAAACGACTTTCAGAACATCCTCCTGGTCATTATGCTTTCTGCAACAATCACCATTCCATTTTGGCAGTGGTTCCTGACCAGGTTTGGGAAGAAGACGGCCGTTTACTTTGGAATCTCTTCAGTTATACCTTTCATGATCCTGATCGTCTGTGTCGAGAGCAACCTGATCGTGACCTACATCGTCTCCTTCGCCGCGGGGGTCAGTGTGGCCGCTGCCTTCCTGCTGCCCTGGTCCATGCTGCCTGATGTAGTGGATGATTTCAAGGTGAAGAACCCAGACTCTTGTGGTCACGAGGCCATCTTCTACTCCTTTTACGTCTTCTTCACCAAGTTCGCCTCTGGTGTGTCCCTGGGCATCTCCACCCTGAGCCTTGATTTTGCAGGGTACGTCACAAGAGGCTGCTCACAACCGGAAGCTGTGGACTTAACCCTGAAAATGCTGGTCTCCCCGGCTCCCATCGTGCTCATCATCCTGGGCCTGATCATATTTAAGAGCTACCCCATCGACGAGGTCACGCGACAGGGCAATCGCAAACTGTTACAGGAGCTGAGGGACAGTGAGCAGGACTCGGAGTCGGACTCCAATGAGCTGCGCAACATGGAAGCCTTCACCAGCGAGTCAACTGTTCTACTGCGCCTGGACGGGACAGCGGCCATGGGGGATAAGTTGAGCCCCGAGGAGAAGTTCCATCTCATCACAAGGAATTTGCAGGAGGTTCTGGGCGAGGACAAACTGAAAGCGATCCTGCAGGAGAAAGAGCTGAAGGTGTACTGGGGCACAGCCACCACAGGGAAGCCCCACGTGGCCTACTTTGTGCCCATGTCCAAGATCGCTGACTTCCTGAAGGCAGGGTGTGAGGTGACCATTCTGTTTGCTGACCTGCATGCCTTCCTGGACAACATGAAGGCTCCCTGGGAGCTGCTGGAGCTCAGGACGCAGTACTATGAGCAGGTGATCAAGGCTATGCTGGAGAGTATCGGCGTTCCCCTAGATAAGCTGAAATTTGTCAAGGGAACAGACTTCCAGCTGAGCAGAGAATACACCCTGGATGTGTACAGACTCTCCTCCATGGTTACGGAGCACGATGCCAAGAAAGCCGGGGCAGAGGTGGTGAAGCAAGTGGACCACCCTCTGTTGAGTGGGCTTCTTTACCCTGGGCTGCAGGCTCTAGATGAGGAGTACCTGAAAGTGGATGCCCAGTTTGGGGGTGTAGACCAGAGGAAGATCTTCACACTGGCAGAGAAGTATCTTCCCTCACTGGGCTATGCCAAGAGGATCCATATGATGAACCCCATGGTCCCAGGACTCACAGGGGCAAAGATGAGCTCTTCGGAGGAGGAGTCAAAGATCGACCTCCTGGACAGGAAAGAGGAAGTGAAGAAGAAGTTGAAGAGGGCCTTTTGCGAACCGGGCAACGTGCAGAACAACGGGGTCCTGTCTTTCGTCAAACACGTCGTCTTCCCCCTGCACGGAGAGTTTGTCATCAAGAGGGATGAGAAGTGGGGAGGAGACAAGATCTATACGGTTTACGAGGAACTGGAGAAGGACTTTGCAGAGGAGCTCGTTCACCCAGGTGATCTGAAGGCCTCTGTTGAGGTGGCCCTGAACAAGTTGCTGGATCCCATCAGGAAAAAGTTTGAGAGGCCAGAACTGAGGAAACTGACAAATACTGCCTACCCTGACCCCTCCAAAAACAAGGGAGCAGCAAAGGGAAACCCCAAAAACACAGAGGAGGACGACATCAGTCCCTCGCGACTGGACATCCGAGTGGGCAAAGTGGTCAGTGTGGAAAAGCACCCGGACGCTGACTCGCTGTACTTGGAGAAGATTGACGTGGGGGAGGCGGAGCCCAGGACTGTGGTGAGCGGGCTGGTGGCCTACGTTTCCCAGGAGCAGCTGCTGGATCGGCTGGTGGTGCTGCTGTGCAACCTCAAACCGCAGAAGATGAGGGGCGTGGAGTCCCAGGCCATGCtgctgtgtgcctctgtCGAGGGCGAGCCTAGGAGGGTGGAGCCACTGGATCCCCCAGAGGGCTCATCGCCAGGGGACCGTGTTTTCGCGGAGGGCTACGAGGCGGGCAAGCCAGACGATGAGCTGAAGCCAAAGAAGAAGGTGTTTGAGAAGCTACAGGTGGATATGAAGATCTCCGGCGAGTGTGTGGCTCAGTGGAAAGAGAAGGATCTCATGACCAAACTGGGACAGATCACCTGCAAAACACTGAAGGGAGGGAACATCAGCTAA

Transcript

SKAU_T00403260

GTAAGGGGCGGGGTGGGTGTGTTCGGAATGAATGACTCGAAGGGGTGGAGACGGACGGATggctagcctactactactactactatcagTGACTCTACCCGATCAGATTCATTTCTAAACGAGTCCAGATCACACAGTTGAGTGTGCTGCTTATTCGTTGTGGTTACATTAGTATATCAACAGACGTACGGGGATATTTGCGTTAATatcaataaagaaaataataatatggCCAAAGGAGAAGGAGCTGGAGAAGTAGCAACAagcttattaaaaaataaagcgGTGAGCCCCGATGAGGTCAGATTAGCGAAGCATGACGAGAAGGGCCGGTTGTCCGTGTGCAATAAGCTGTGCTACGCCGTCGGAGGGGCTCCCTACCAGATCACGGGATGTGCGCTGGGATTCTTCCTGCAGATATACCTTCTGGACGTAGCTCTGTTGGACCCCTTCTATGCCTCCATAATCCTGTTTGTAGGGCGAGCCTGGGATGCCGTGACAGATCCCACCATCGGGTTTCTCGTCAGCCGAAGCCCGTGGACCCCCCGCTTTGGCCGGATGTTGCCCTGGATTGTGCTGTCCACCCCATTTGCGGTGCTATCCTACTTCTTGATCTGGTACGTCCCTCCTTTCGAGCAAGGCAAGGTCATGTGGTATCTGGTCTTCTACTGCCTCTTCCAGACCCTTCAAACGTGCTTCCACGTGCCGTACTCCGCCCTCACCATGTTCATCAGCTCCGAGCAGAAGGAACGGGACTCCGCCACGGCCTACAGAATGACGGTGGAGGTGCTCGGCACGGTCATAGGCACGGCCATCCAGGGCCAGATCGTGGGCGGGGCAAACGCACCCTGTATCCCTGGGGACATGCCGCTTGTGAACGGGTCCAATTCCTCAGTGCTCCTGATGGGACCGGATGTCAACATCACCCAGCCACAGATTTCTCTAACTCAAACGAGAGAAGCTTACATGATTGCATCAGGTGTCATCTGCATCATGTACATCCTGTGCGCATGTATTCTCTTCTGTGGAGTGAGGGAACAGAAAGATACCAACCGCCTGAGCCACAAGCCCGAGCAGCCCATGTCGTTCTTCCAGGGCATGCGGCTCGTCATGGGCCACAAGCCGTACGCCAAGCTGGTGATGGGATTCCTCTTCACCTCATTGGCTTTCATGCTGCTGGAGGGAAACTTTGCGCTGTTCTGCAGTTATACCCTGGGCTTCAGAAACGACTTTCAGAACATCCTCCTGGTCATTATGCTTTCTGCAACAATCACCATTCCATTTTGGCAGTGGTTCCTGACCAGGTTTGGGAAGAAGACGGCCGTTTACTTTGGAATCTCTTCAGTTATACCTTTCATGATCCTGATCGTCTGTGTCGAGAGCAACCTGATCGTGACCTACATCGTCTCCTTCGCCGCGGGGGTCAGTGTGGCCGCTGCCTTCCTGCTGCCCTGGTCCATGCTGCCTGATGTAGTGGATGATTTCAAGGTGAAGAACCCAGACTCTTGTGGTCACGAGGCCATCTTCTACTCCTTTTACGTCTTCTTCACCAAGTTCGCCTCTGGTGTGTCCCTGGGCATCTCCACCCTGAGCCTTGATTTTGCAGGGTACGTCACAAGAGGCTGCTCACAACCGGAAGCTGTGGACTTAACCCTGAAAATGCTGGTCTCCCCGGCTCCCATCGTGCTCATCATCCTGGGCCTGATCATATTTAAGAGCTACCCCATCGACGAGGTCACGCGACAGGGCAATCGCAAACTGTTACAGGAGCTGAGGGACAGTGAGCAGGACTCGGAGTCGGACTCCAATGAGCTGCGCAACATGGAAGCCTTCACCAGCGAGTCAACTGTTCTACTGCGCCTGGACGGGACAGCGGCCATGGGGGATAAGTTGAGCCCCGAGGAGAAGTTCCATCTCATCACAAGGAATTTGCAGGAGGTTCTGGGCGAGGACAAACTGAAAGCGATCCTGCAGGAGAAAGAGCTGAAGGTGTACTGGGGCACAGCCACCACAGGGAAGCCCCACGTGGCCTACTTTGTGCCCATGTCCAAGATCGCTGACTTCCTGAAGGCAGGGTGTGAGGTGACCATTCTGTTTGCTGACCTGCATGCCTTCCTGGACAACATGAAGGCTCCCTGGGAGCTGCTGGAGCTCAGGACGCAGTACTATGAGCAGGTGATCAAGGCTATGCTGGAGAGTATCGGCGTTCCCCTAGATAAGCTGAAATTTGTCAAGGGAACAGACTTCCAGCTGAGCAGAGAATACACCCTGGATGTGTACAGACTCTCCTCCATGGTTACGGAGCACGATGCCAAGAAAGCCGGGGCAGAGGTGGTGAAGCAAGTGGACCACCCTCTGTTGAGTGGGCTTCTTTACCCTGGGCTGCAGGCTCTAGATGAGGAGTACCTGAAAGTGGATGCCCAGTTTGGGGGTGTAGACCAGAGGAAGATCTTCACACTGGCAGAGAAGTATCTTCCCTCACTGGGCTATGCCAAGAGGATCCATATGATGAACCCCATGGTCCCAGGACTCACAGGGGCAAAGATGAGCTCTTCGGAGGAGGAGTCAAAGATCGACCTCCTGGACAGGAAAGAGGAAGTGAAGAAGAAGTTGAAGAGGGCCTTTTGCGAACCGGGCAACGTGCAGAACAACGGGGTCCTGTCTTTCGTCAAACACGTCGTCTTCCCCCTGCACGGAGAGTTTGTCATCAAGAGGGATGAGAAGTGGGGAGGAGACAAGATCTATACGGTTTACGAGGAACTGGAGAAGGACTTTGCAGAGGAGCTCGTTCACCCAGGTGATCTGAAGGCCTCTGTTGAGGTGGCCCTGAACAAGTTGCTGGATCCCATCAGGAAAAAGTTTGAGAGGCCAGAACTGAGGAAACTGACAAATACTGCCTACCCTGACCCCTCCAAAAACAAGGGAGCAGCAAAGGGAAACCCCAAAAACACAGAGGAGGACGACATCAGTCCCTCGCGACTGGACATCCGAGTGGGCAAAGTGGTCAGTGTGGAAAAGCACCCGGACGCTGACTCGCTGTACTTGGAGAAGATTGACGTGGGGGAGGCGGAGCCCAGGACTGTGGTGAGCGGGCTGGTGGCCTACGTTTCCCAGGAGCAGCTGCTGGATCGGCTGGTGGTGCTGCTGTGCAACCTCAAACCGCAGAAGATGAGGGGCGTGGAGTCCCAGGCCATGCtgctgtgtgcctctgtCGAGGGCGAGCCTAGGAGGGTGGAGCCACTGGATCCCCCAGAGGGCTCATCGCCAGGGGACCGTGTTTTCGCGGAGGGCTACGAGGCGGGCAAGCCAGACGATGAGCTGAAGCCAAAGAAGAAGGTGTTTGAGAAGCTACAGGTGGATATGAAGATCTCCGGCGAGTGTGTGGCTCAGTGGAAAGAGAAGGATCTCATGACCAAACTGGGACAGATCACCTGCAAAACACTGAAGGGAGGGAACATCAGCTAATCCCCCCCATCTACCAGCCAACATGGATTCTCCAGTCTCCATGACAACTGGACTTACACAGGCAAGAAGGTGGTGGGTTGTGGGGGAGGGGGAATTAGTGAGAACCTCTACATAATGTGTACAGTTAAACAGGGTTTTCTGTGCTATTAAATGGCTTTATGGCCCATTTCTGTTCTTGAGGTTTATCATGCTATTACCTTCTCACTCATTAtttcctattaaaaaaaaaaacgttgaatAGTTTTAACAGATTGCGTACTCTGGAATACCATTGTACATAGGGATCTTGTGTACATTCAGGGCTTGTGTGATTGGCATGTACATTGTTATATTTTAGTCAGTGGGAAATGTAGTCTCTCTCCATCTACCGATGGCTTATGCAACAGTTCATAAAAGCCAGGGGCTAGTCCCCTTCAAATACCACTTATATTTGAATCCGTGGGAATTGTAGTCCATGTACTCATAACATCTGTCCCCCACCAAAGAGTTTTGTGTCCTGAGGCATTCCAGTAAAGCTGAACACATTTGGATAAGTATGTTGCTGGTCTAACTGGAAACAAAGCTTTGTTGTGTCTTTATTCCGACCACAAGATCcggtattcagtgtttttttttttttttagctattgGATTGTCCAGTTATCTGGAATTGAAGGTTGTGACAGCAGTCAGTCTGTGTCTGAATGGTTGTACTGGAAGTCTCCAGAATTCAGTTTTAAAATACAAATTGATTATACTATATAACCTGTGACGGATATATCATTGTCGTGTAACCAACTGCAGGGCTTCTCTGGCATTACTTCCACAATACATGATTTGTACATTATTAAACCGCTATAATACTCTGTTTATTTCTATGTTTTGTCAAATACATGGAAAATTCTGATGCAATTGGTGCTTATCGAATTTAACTCCATGCCAAAAGCTTTATAAATATTTTATCTCTGTTAATAGGCTTTGGGATTGTCGCTTTATACATAAAACTAAAGTGGAGAGTGTATTGTGTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00579	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan
PF01588	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan
PF13347	MFS_2	MFS/sugar transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002305	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR002307	Family	Tyrosine-tRNA ligase	Interproscan
IPR002547	Domain	tRNA-binding domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR039672	Family	Lactose permease-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11328	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004831	Molecular Function	tyrosine-tRNA ligase activity	Interproscan
GO:0005215	Molecular Function	transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006437	Biological Process	tyrosyl-tRNA aminoacylation	Interproscan
GO:0008643	Biological Process	carbohydrate transport	Interproscan
GO:0015293	Molecular Function	symporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0051978	Molecular Function	lysophospholipid:sodium symporter activity	Interproscan
GO:0071702	Biological Process	obsolete organic substance transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-