Gene detail

Detailed information of SKAU_T00399040 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00399040	ATAXIN 1	CM056396.1	7746859	7754117	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00399040

ATGCAGGGCGCTAGAGTGGAGCGCCGTCTGGCAGGACTATTGTCCGCCCCGCCTCGGAAATGGGCTGTTTACAGCGGAGACCACTCACTCACCCCCTTTACCCTCCCCAACAACacactgatctctgatcagcCCCTCTGCAAGCCTGCAGATCAGTGCCAGTGCCAGGAGAAGCCGCTGGTAGTGGGGCCCGCCAGCGAGAGCCAGCGAGGGGAGAACCTGGCTTGGCTCGCCAGCGTGGCCAGTGGGCACGATGGCAGAGGGCAGCGCATGGGTACACCGCCTGTGTCCGACGGGATCCTCTACAAGCCTATGACCGAGTACTccccctcttcttcctcctcctcctcctcgctttCCAGGGCGGTGGTGACGTCCCTCCCCACGGCCTACACCTCGGCCCTCTCGCAACCCGCCCATACTATCCAGTACACCCAGCTCCCGCCCAATCTGCACTTCATCAACTCGTCGTACGCAGGGCCTTACGCTGGCTACATCTCCTCCCAGCTCGTCTCCCCGGCCTCCACGTCTGCCCCGCCATCCCGCTCTCACCCGGAGGCCTACGGGGGCGCCGTCATCACGCAGGCCTCAGCCAAGGCTGAGCAGCGGCAGCAGCTCGTCCGCTCCCCGGGCATGATGATGATGGAGGGCGGACAGTACGTCCACATCGCCAGCTCCTCCCCTCTGAGCATGACATCGCAGACTGTGTCCTCGCCCCATGCccacctccctctccacctccacTCTCACCCGGCCATCCTCCCGCAGGCCCTGGCCCTGGGCGGGTCGTCGCAGGTCCTGGTTCAGTACTCGCCTCAGGACAGACCGACTAAAAAGGAGGACGGGCGGAGCAGGGAGATGCTAAACGGGGAACTGGAGGCGGGCCGGCATTACCGCCTGTCGCCAGAGAGCTTTCTGGGTAAGCAGAGCCCCGGGGCCAAGACGGGGTCCAGCcaacaccaccatcaccaccaccaccagcagcagcagcagcatcaccACTACGAGGCCCGGCATGTCATGATCCCTGCTGACCACACACAGGAAACATCAGGGCTTCGAACATCTCTGATGCTGGTGCCTAACAGCCACGGCGACTCGATGAGCAGCCCGGAGAAGCTACCGCCCTCCACCATTGCCGCCGGCGACAAAGGCGGACTCTGCTTGGGCAAGCCGGTATCCCGGGCCTCCCCCTTCGCCTTCCCTGCCCCGCAGCCGGCCGCGACGGTCACCACCCTCTCCCCCCACAGCGTCATCCAGACCACTCATAGCGCATCCGAGCAGCTGTCCGTGGGCCTCCCCTCCGGCAACTTCTACCCGGCCGCCGGCCAGCCGCCCATCATCGGCTACATCGCAGGCGGGCAGCAGCAGGCGGTGGGTTACCATGCCGGTCTCACGCCGCAGCTGCTCATCCCCAGCAGCCAGCCCATGATCATCCCCATGAGCGGCGGGGACCCCGCCCACACCGCCACCGCCACCCAGCAACTGGTCACCGCCGCCGTGGCCAAATGCGAGCCCTTCCAGGGAGCCGCGTGGCctcgcccccgccccccgccgccGCCCACCTCCGCCCCCTCGCTGCCTCCCTACTTCATAAAGGGCTCCATCATCCAGCTGGCGGACGGGGAGCTGAAGCGGGTGGAGGACCTGAGGACAGAGGACTTCATCCAGAGCGCCGAGATCAGCGGCGAGCTGAAGATCGACTCCAGCACGGTGGAGCGCATTGACGGCAGCCCCACGCCCAACTTTGCCATCATCCAGTTCGCTGTTGGGGAACACAGAGCACagGTTAGCGTGGAGGTGCTGGTGGAGTACCCCTTCTTTGTTTTTGGGCAGGGCTGGTCTTCCTGCTGCCCAGACAGGACCACCCAGCTGTTCGAGCTCCCATGCTCCAAGCTGTCGGTGGGCGACGTCTGCATCTCCCTCACCCTCAAGAACCTGAGGAACGGTTCGAAGAAGGCCCAGTCCTTGGACGTCGTCGGGGGAAACGTCGGCCTCCTCCTCAAGCCCCCTAAAGCACGGGGGGGACACTACGGGGAGCAGGAGAACGGGCTGAACCAACGGGCGGGGGAGAGGGGGCGCGGGGTCGCCGCCCAGGTCGAAAACGGGGAACTGAGCTTCGGGGAAAAGGGGGCGTCCTGCAGGGCTCCGCCGCCCAAGACAGAAGCCGGCGCCGTGGGCAAACCGGCGGGCCGCAAGAGGAGGTGGTCGGCCCCGGAGAGCCGCAAGGTGGAGAaaatggaggaggagcctcctttGACTCTGCCCAAGCCCTCATTCATCCCTCAGGAGGTTAAGATTTGCATCGAAGGCAGGTCAAATATAGGCAAGTGA

Transcript

SKAU_T00399040

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08517	AXH	Ataxin-1 and HBP1 module (AXH)	Family	Interproscan
PF12547	ATXN-1_C	Ataxin-1 like family	Disordered	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003652	Domain	Ataxin, AXH domain	Interproscan
IPR020997	Domain	Ataxin-1, N-terminal	Interproscan
IPR036096	Homologous_superfamily	Ataxin, AXH domain superfamily	Interproscan
IPR043404	Family	ATAXIN1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13392	ATAXIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0007399	Biological Process	nervous system development	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-