Gene detail

Detailed information of SKAU_T00398810 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00398810	RNA POLYMERASE II CTD PHOSPHATASE	CM056396.1	6972682	7043654	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00398810

ATGAGCATTGTGATCAGATGGAGGACCCTGCAGACTCTGGCGGCGGCACTGCAGTTTCAACGGGCCCCTCGATTGGAGAAGGAGGCCGGCTCTGAACCACGGGAGCAGTCGAACAGGCTGCCGGAGAAGAAGGTGAAATCGGACCGTGCCGGAGTAGTGAGAGAGCTGTGCTGTCAACTTGGACAGGTCATCTCCCCAGGGGTGGTGCTCGCGCGAATAGAAGAATGCAGCCATCCCATCGTCATGAAGGGGCTGTGTGCGGAATGCGGCCAGGACCTCACGCAGTTTCAGAACAAGAACGGGAAGCAGCAAGTCCCCATCTCCACGGCTACGGTCTCCATGGTGCACAGTGTCCCGGAGCTCATGGTCAGCTCGGAGCAAGCGGAGCAGCTGGGCAGGGAGGATCAGCAGCGTTTGCACTGCAACAGGAAGCTCGTTCTGATGGTGGACCTGGACCAGACGCTGATCCACACCACGGAGCAGCACTGTCAACGCATGTCGAACAAGGGAATCTTCCATTTCCAGCTTGGGCGCGGGGAGCCCATGCTGCACACGCGGCTCCGCCCACACTGCAAGGACTTCCTGGAGAAGATCGCCAAGCTGTACGAGCTGCACGTGTTTACCTTCGGCAGCCGGCTCTACGCACACACCATAGCAGGCTTTTTGGACCCGGAAAAGAAGCTCTTTTCTCACCGGATTCTGTCGAGGGACGAGTGTATCGATCCGTACTCCAAAACAGGAAACCTGAGTAATCTGTTTCCCTGCGGAGATTCCATGGTGTGCATTATCGATGATCGGGAAGACGTGTGGAAATTTGCACCCAACCTGATCACAGTGAAGAAGTACACCTACTTCCAGGGCACAGGGGACATCAATGCCCCTCCTGGATCCAGGGAAGCCCAAATGGCAAAGAAAGCAGCCAATCATGTAAGCAGGACAGCAGAGGGCCCTGCGGCGGCGACGTCGGGCAAGGACGGGGAGGAGGACGGGGTGTCGGGGCTCGAGGAGCACAGCAACGGTCTCAGGAAACAGGAGAAGGAACGTAACGGGAGGGGGCTGCGGTCGGGGCGGACACTTCACGGGGTAAACGACACGCCGAATGTAAAGGAAGAGGACGGCAGCGGGCCGGCGACCGAGACGCCCGCCACAGCCAGCGCGGCCGCGGGCAGGACTAGCAACGAACTGGACTTTGACCTCTCCAGCGACAGCGACAGCGAGCCGGGTGCAGGGAACCCGTCCTCGTCGGACACCGAGGGCGAGGGGAAGGCCAAGGACCCCGAGGGGGCGGAACCCGCCGGCGACGCCGACCGGGGCGTGGCCGAAAAGCAGCCAGCTGCAGGGGAGGAGACTTTGGGCGGGATCCCCCTCGCCACAGAACAGGAAAGCCTCCGAGAGCTGGGCAACGGGTGCCCGGACAAAAAAGAGGCGGAGACAGAATCGCAGAACAGCGAGCAGTCGGGGGTGACCATGGGGGAGGAGTCTCTGGACCAGAgcatggaggaggaggaagaggaggagcccgACCTGGACATGGACGACCACTTGATCTACCTCGAGGTGGTCCTGGCCCGCATCCACAGAGAGTTCTATGCTAGGTATGATGACTTCCTGGCCAAGAAGAGCTCCGAGGAGCCCGACATCAGGAAGATTGTCCCAGAGCTCAAGAGCAAGTCCTTGGAAGGGACGACTATCATGTTCAGCGGCTTGTATCCCACCAACTATCCCATGGAAAGGACGCGGGAGTGCTACCACGCCAAAGCCCTGGGAGCCAAGATCGGCAAAAATCTCATTCTTAGCTCCAAAGACCCAAACCGAACAACACACCTCATCGCTGCACGAGCTGGCACAGAGAAAGTGCGGCAGGCCCAAGGCTGCAGACACCTGCACGTGGTGAACCCTGACTGGCTCTGGGGTTGTTTGGAACGCTGGGAGAAAGTGGAGGAGCAGCTCTATCCCCTTAAAGAGGACTACATCAAAACGCAACGGAGCAACAGCCCGGCCACGTTTCCTGACATCCATGGCGCCTTCCAGACGCCGCTGTTCCACCCGACGCCCATCCACCCCAAAACGCCAGCAGCTCCGGAGGTGCGGACGTACGACCCCGTAACTGGGAAACTGATCCGACGGGGATCGCACCCCGGATCGCGTCAGCCGGCCTACATTCAGGCCCCCGGACCCCCCCTATCGCTGTCCGTGCACGGGGAGCAGTCATCCTTCAGGGTAGTGCAACAGCAGGAGGAGACCCCAGGCTCTAGTCGGGATGAGGAACAGGCCGGCCCTTCGCGCAGGAAACGACAGCCCAGCATGTCGGAGTCCATGCCGCTCTACACCCTGTGCAAGGAGGACCTGGAGAGCATGGACAAGGAGGTGGACGACATCCTCGGGGAGGAGAGCGACAACGAGAGCgaaggtggaggaaaggagggacgGGGCGGAAGCCGAAGGCggagaggaagaggcggagggCGGCACGCGGCTTCCGGACGGCGAGCCCTCGAAGGCCCTGGGAACCGTTATCGAGGAGAGGACGGCGACGCCCTCCAGCGACGAAGCCAGCCTGACGGGGCGCGCGCCCAGGCTCCGCCCCAGCGGCCGTGTCGgggtggttgccatggtgacgTCCCGGGGCACGTAACCGCCAGGAGGAGGCGGTCTGCCGTATCAGAGCACCAGGCGCTGGCCTGGGCAGGGCGGTAA

Transcript

SKAU_T00398810

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03031	NIF	NLI interacting factor-like phosphatase	Family	Interproscan
PF09309	FCP1_C	FCP1, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357	Domain	BRCT domain	Interproscan
IPR004274	Domain	FCP1 homology domain	Interproscan
IPR011947	Domain	FCP1-like phosphatase, phosphatase domain	Interproscan
IPR015388	Domain	FCP1-like phosphatase, C-terminal	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR039189	Family	CTD phosphatase Fcp1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23081	RNA POLYMERASE II CTD PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004721	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008420	Molecular Function	RNA polymerase II CTD heptapeptide repeat phosphatase activity	Interproscan
GO:0070940	Biological Process	obsolete dephosphorylation of RNA polymerase II C-terminal domain	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-