Gene detail

Detailed information of SKAU_T00398730 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00398730	RNA-BINDING PROTEIN RELATED	CM056396.1	6024943	6104497	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00398730

ATGGCCAAGGGAGAAATTGAGAAAATTCAGAAAGATGAAGACAACGAAGAGGAGAAGTTCATTGACGTTGTCGTCAACAAGAACATGAAACTGGGGCAGAAAGTATTAATACCAGTCAAACAGTTTCCTAAAtttaacTTTGTTGGAAAACTCCTTGGCCCACGTGGAAATTCTTTAAAGAGACTACAGGAAGACACCCTCACAAAGATGTCAATTCTAGGGAAAGGTTCCATGAGAGACAAAGATAAGGAGGAGGAACTACGGAAGAGTGGAGAGGCCAAATACCAGCATCTCAACGAGGACCTGCACGTTCTCATCGAAGTATTCGCCCCACCGTCTGAGGCCTACGCCAGAATGGGTCATGCACTTGAGGAGATCAAAAAGTTCCTCATCCCTGATTACAACGATGAGATCAGACAGGCGCAGCTGCAGGAACTGACATATCTGAACGGGGGCTCGGAGGACGCCAAGGTACCAGTGGTGAGGGGGAAGCCAGCGGTGCGAGGAAGAGGAACGCCCGCTCCTGGGCCACCTAGGAGTCGGGGTGGAGTGCCCCCTCCGCAGGCAGCAGTTCCGCGGGGTGCTGCCCCCAGGGGAGCCCTGAAGAGTCGAGTTCCTGCCTCCAGGGGGAGGGGCGTGCCAGCACAGAGGGCTCGTGGGGCACCCCCTCCAACTGGATACCGGCCTCCCCCACCCGTAGTGCAGGACACATATGGAGAATACGAATATGATGACGGCTATGGGGCAGCTTACGATGACCAAGGATACAACTCTTATGACACCAGCTACAGCAGTCAAGGACAAAACTCAAATGATTATTATGAATATGGACATGGCATAAGCGAGGAATCATATGATTCATACGCAGGCCAGGAAGAGTGGACTAACAAGCGTCACAAAGCACCACCAGCAAGAACAACGAAGGGAGCGTACAGGGAACAGCCATACTCCAGATACTGAACTATTTATACAAATGTGCTATGTTGTTCCAAGTTATGGATTTTCTATGGACAATCCCTCTGTTTTAGTTACGCAAAGTCAAGTGGAAGCAAATGATGAATTGGACAAAGGCCGTGATATGGTTGTAAGGTTAATTTAAGCATAGTGGTGGAGACCATGGAAGATACCAATAACATGTAATGACACCATCTACAGGAGAACCAAAAGTCTGTAAACTAGGTAATCTATCTTTTCCTTACAAACTAGTATTCAAAACCACTGAGCCACACATTTTGACTGGAGGGCTTTATTTCTGTAAAATGTTATTtagttttacattttaatttctaTTGATGGGTAGAGGGAATGGGTAACATAGATACTATTTCTGAGGGGTGATTGGTATAAGTGTGTCCATTGTAAATTTACCTTaacaaaacaagaaagaaaatcaTGATGCAGATACTGTTTTATCCTTCTTTTTTTGTAACTAAAGGTTCTTTAACATTAAAGGGCTTATAGAAGCATGTAGTGTAAACATTGAGTACAGTTTTACTTTGACATAGTTTCAGCTTGCTTTGATATACCCGATTCCATGTTTAATCACATTGTCCATTTCAGGAAGTAATGTGTGGCATTGAGGAGATTGCTGAAAGTGATGGATGTTTTACACTCAATTTCTTTAATTTTAGCCATAGGTCAGGGTTGCCAGTGCTGGAAATATTAAATAATTGTATCTGGTAACTGGGAATTTAGCCCATTGCTGTGCTACACCATTTCTAGGAAAATTGGGGCAAATAGTACAAAAATAATTCTTATTTTATGATAGAAGTAGTATGTGTTGTTAATATTCAAATCAGAAGCTTATGTAAGCCCTTTAATATTTTCCTCTTGGGTGATGCTAAATAAACTTTTTGAAAGAAATCTATGTGTTTGAGATAATTGTATACCATAATTGTATGTTGTGGATATTTAAACTTGTGATAATCTaaactaacaaacaaaaagtACCAATAAAGTTAGGATTGTTAAATTATGCTATTGTTATTTCATGCAAGATGTTAAATCTGAAAAAATGACATTTCACTTAACAATAACATTTTTTCATTGTGCTTGTTAAATTCTCaggaaaataaaaatgtacattttaaaaagtgcttAAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16568	Sam68-YY	Tyrosine-rich domain of Sam68	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004087	Domain	K Homology domain	Interproscan
IPR032335	Domain	Sam68, tyrosine-rich domain	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR045071	Family	KH domain-containing BBP-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11208	RNA-BINDING PROTEIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0048024	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-