Gene detail

Detailed information of SKAU_T00396200 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00396200	AP-1 COMPLEX-ASSOCIATED REGULATORY PROTEIN	CM056395.1	29489004	29506800	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00396200

TTTGTGACAAGTTTCACCCAAACGGGCTTCCGTAATCAAGAGATTGTCACGTGTATGTACCAGGAAGAGGTGGACAATACCTAGAACAATGAGGGCTCTTCCTATGAAACACAACTGTTAGCGGTGTTGAAGAGTCAATGAATCCTCAACCATGTCGCCTATATATTTTCAAATCAGCTGTCTTCGTCAAAACCAGATGTAACATTTTATAACTGTGGCCCCTAAATGGCCAGTTTCAGCGTGGCCTTCTCGCGTGATGAGTGCTGATTGACCGGGGTGGTGGCACCGCGTTCAGTCCGCTAACGATACAACTGGACAGCTATCAAACTTTAGGTTCTGCGTTTTTCAACAGAATGCAATGGGAAACTGCTGGACTCAGTGCTATGGGATGTTCAGGAGGGAGGCTAACAGGATCCAGCGAGGAGGGGGGTCCAAGTATTTCAGAAGCAGCACCACTGGGGAGCATTACACTATAGAGtttgagAACTTGGTGGAGAGTGATGAGGGGGAAACTCCCAGGAGCAGTCCAAGGCCAGTCAGTGAGGAGGAGATGGTACATCTGAGGGAACAGCGCTATACCGCCATCTCTGACACACAGAGGCTCATCGACCAGAAGCTGCAGGCCGAGTCGGAGGCGAGGGAGGAGTCGCTGCGGCAGGAAGAGGAGGCGCAGTACGCCGCTCAGCGGGAGGCGGCCAGGGCCGCACGGGAACGAATGCACACAGAGAAGCAGGCAGCACAGGCCAGGACTGAAGAGGATGGATGCGCAAGTGGACACCAGAAGACGCTGGCTGCGGGAGAGGACTTTGACACCCACCCATCCAACATGAAGACCGAAACGGGAGGGGCATCCAGGAGCAGCCGAGTTTCCTCTGAGACCAACGTGGTCACGCCCAACACGGAGAGCAGCTACGATGTCACCAGCAAGACTCGCTCCACCAATGAGGATGGGACTTCTCTTGACCTGGAGTGGGAGGATGAAGAGGGCATGTCAGCGGCGGTACTGGTTCCGGAACGGTCGCGGACGGAAGAGGACATCCTgaaggcggcggcggcggcggctgggAGAGAAGGCCCGAGAGGAAGCTACCCCGCCTCGGCCTCGGAGGACTCCAACGCCCTGGAGTGGGAGAACGACTTCGTCAGCGCCCACGGCGACGACTTTGAGTGCGACGGCTTCGTCAACCCCCTCGTGGACACACCCTCCGAGGTCACCACGGAAACCTCCATCTCTGACAAGCAGGACAGATAGTGCCGGGGGGTGGGGAGGGTTGggtgttaaattaaaaaaacagaccCGAATGTTTGTTTTGTGGTAGTAAACCAAACTTTCACCAACCTGCTAATCTGAAGCTAAATATTTTGAGTAATTTTTATAATCTGAGGGCCTGAAAGTCACCCCGCTCTCTTGTGTTGAATGGGTACTGGTTTGTTGGTGGATGGATTATAGTTTAATTGAATTTAATCCGCACTCTAATAATATTAACAGCTGTGTTAGAATAATgataaccccccccaaaaaaatctaACGTGTAGAAGATGTCTCTTTCGATTGGCTGGTAGGTCAAAGTTTCAGTGCTGTCCGATGCTTTGAGTTGGACACAAttttcatctttttacattcTTACTGGATTTAGCCTTAGTTTGGGAGAGTGCAGTCCACCTTAGTCTGCCTGTGCTGTCTTCAAACGGGACGTCATTTTCTGTACAGGCACGATATTGAAGCAAGTGCAATTTACAAAGTGCTCTGATGAACTGtgtttgtgcgtttgtgcgtttgtgtgtgtgtgtgtttgtgcgtttgtgtgtgtgtgtgtttgtgcgtttgtgtgtgtgtgtgtttgtgcgtttgtgtgggCATGCAAGCCTTCCTGACAAACACACCGTGTAAACAAATCATACCAGAAGCCTGTCTTTTGTCTTGTAGTTTTGACTCTTCATTCTTTAGTTAATTCAGGGATACTTAGCGTTTGTATGCCTGTGGTGACTGATATTTTCAAATCATTGTCGCAGTTTCCTCTAGTTTGCAATCATGGATCATGCGTGCCTGTAAATACTGCCTGATTGGCTgcgttttacatttttaaatcaaCATTCCAGAGTTTAATGTATTAACCCaaaatcctggtcctggagagccacagggtctactggggtccccaactctggtcctggagagacacagggtctactggggtccccaaccctggtcctggagagccacagggtctactggggtccccaactctggtcctggagagacacagggtctactggggtccccaaccctggtcctggagagccacagggtctactggggtccccaactctggtcctggagagacacagggtctactggggtccccaactctggtcctggagagacacagggtctactggggtccccaactctggtcctggagagacacagggtctactggggtccccagctctggtcccggagagccacagggtctactggggtccccaactctggtcctggagagacacagggtctactggggtccccaactctggtcctggagagacacagggtctgctggggtccccaaccctggtcctggggagccacagggtctgctggggtccccaactctggtcctggagagacacagggtctactggggtccccaaccctggtcctggagcgtTACAGGGTCGGTTGTTTTATAGTTACTCAGTGCTTAATTGGTTAAGCAGTTAAACAAGACCAGTTGTTTACAAATTTAACTGAGCTCGCCTGGTTTCTTTTGGTATAAAGTGGGTTGCTGATATTAGGGACcaggctctccaggaccaaggttggggACCCCTATGTTAAGCAGAGGTGCGGGTTGCCAGACACGTCTGGTTGCTCCAAGTCACCTGGTTGAGGTTCCAAGTTGAGGAAGCGATCACCTCCAGCCCTCGAGGGATCGACCCCAGTTGGCTGCCAAGGATTTTGGGACGGCCTCTTCATGAGAATGCCTCACGTTTTGGAAAGCGGAAGGCCGGTACCCCGACGAACGTTCCCCGGGCGCCGTCCTGATTCTTGTGCGTTGTACAGACCTTTCCCGTTTACTCCACCGACATTCCTGGAACAATCCTGGGGGAGCAAGGCGGGTCTTCCAGGCTCATACCGGAGCTCCCTGTATGGGCTGCTTTCTGCTCCAACTGCCTCACAATGCACAAACATCACTAAATATTTAAATAGATGAGAATTAAGTAAATCATGTAATGTTGCTGTAATTTGAATAAAGGTGTGGTTACCTAAGGTTGGTTAGTTTCAGTAACCaagtgtccacactttcagccTTTAGGACTCGTTTGATTTGGCCTGTCAATCATCAGGTGTGTGTAATCCTGCCCCTTGACAGACGGCGGATTGGGTAGCGGCTTTTTACAGACGGCGATTTGGGTAGCGAATCTTTACAGACGGCGGTTTGGGTAGCGGCTCTTTACAGACGGCGGATTGGGTAGCGGCTCTTTACAGACGGCGGTTTGGGTAGCGGCTTTTTACAGACGGCGGTTTGGGTAGCGGCTCTTTACAGACGGCGGTTTGGGTAGCGGCTCTTTACAGACGGCGGTTTGGGTAGCGGCTTTTTACAGACGGCGGTTTGGGTAGCGGTTCTTTACAGACGGCGGTTTGGGTAGCGGCTCATTAGATTTTAGAAATTGCGCGCTCAGCGGTTTGCGGGTCTGAGAAGGTCGGCTCGTTTTGTAAACCGACTCGGCTTCCTCACGGAGAGGTTTTCTTAATTTCACCGATTAGCACAAAACATAGTTCGCCAAAGAGACAGGCGGGTCATGAGCCACCATCGCCACGCTGGGCGCTAACTGCTACCCCCCATGTAAACACTGGCGAGTGTGTGGcgggtgtgtgtgagcgtgtgccacGTTGAGTAACTTGTTCACTCTTGGCGGTAGTGCACGTCTGTGTTTTTCTACCTTGCCTGTTTTAGATGCTTATTCTAACACATTTGTTTAATGTTGGATACTGCACTTTCTTTggctctccctcactttctctctctaatTCCCCCCCCCGGCTCTATAGTTGTTGTCCAAAGTTGCAGCACATTGAGTTTTAACGTTGGGTGGGAGGTACGTTTCCCGAGCGCGTATGCACCGATGCAGCACACAGGCCTTCCCTCTGGCCTCTTTAGAATGGCTGCACTCATAACAGATTGGCAGCAGCAACGTGGGACCGAACGGCCGCTGAACCGGCAGGCTACTGCGCTGGCCTCCTCGCCGCCTAGTGGTAAGACTTTGCTACTGCGGGAGACCCTTCTTTGCCTGCCTTTTCATCTTAGAGAGCCGGGACACTCAAATGTGGCGCTCCAGGCCAGTAGTGGTGCTGCTTTTCGTTCTTACCGTCTAATCTGGGACTGATTTAAACGTGGGACACctggtgagttaaatctctggccagtcAGTGGCATTGTTAAAAGGAAAGCAGCAGCACTACTGGCCTGGAGGGCcacatttgagtatccctgctctcGGGCCTAAGGCTGTAAAGGTTACAGCGGGAGAGGAAGCCAGGCCAGTCTGCCAGGCAGTCAGTGAATGAGTGAGCTCGTGACAGAGAGGAACGCTGCTGTTTTTGAGGCTGCTATTAAAAATAGGACAATTTCCCCTGGAATACAACCCTATGCATCCAAACTGTAGCAGTTGACCAAAGAAAAGCTGGGTGTGATGTGTGTCGTTCTGTGGTATGTGGACCCTTAGTCCCTTCTCTTCATATCGTTGAAAAATGTGGGAGATGTTATGCaaggcctttttaaaaaaaaatttgaatagtaTATTGAAATGCGGGACACGGTCCAGCGGAGCTCGTATCAGCTCTGGCAGTGGGAGTTGGGGTGGGATTTGCATGTGGTGCGATGGAGCAGGATGAGAtg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15745	AP1AR	AP-1 complex-associated regulatory protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031483	Family	AP-1 complex-associated regulatory protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34529	AP-1 COMPLEX-ASSOCIATED REGULATORY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005768	Cellular Component	endosome	Interproscan
GO:0019894	Molecular Function	kinesin binding	Interproscan
GO:0034315	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0035650	Molecular Function	AP-1 adaptor complex binding	Interproscan
GO:0048203	Biological Process	vesicle targeting, trans-Golgi to endosome	Interproscan
GO:1900025	Biological Process	negative regulation of substrate adhesion-dependent cell spreading	Interproscan
GO:2000146	Biological Process	negative regulation of cell motility	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-