Gene detail

Detailed information of SKAU_T00396030 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00396030	GUANYLATE BINDING PROTEIN	CM056395.1	29206001	29237854	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00396030

ATGTGGGTGTTTCTGGTTACAGGAAACTCATATGAGATGGAGGGACCAGTGTGTCTGATACAGAACACAAGCGCAGGTGAACTGCAGGTGAACCAGGAAGCCCTGGACATTCTGAGGTCAATCGGGCAGCCTGTGGTGGTGGTGTCCATCGTAGGCTTGTACCGCACGGGCAAATCTTACCTGATGAACAGACTGGCTGGAAAGACCACAGGGTTCTCCGTATGCTCCACCATCCAGTCTGAGACGAAGGGCATCTGGATGTGGTGTGTGCCCCACCCCCGCAGAGATGATGTAACTCTGGTCCTGCTGGACACAGAGGGTCTGGGGGATGTGGAAAAGGAAGATGAGAAGAATGACACCTGGATCTTTGCCCTGGTCATTCTCCTGAGCAGCACCTTGGTGTACAACAGCATGAGGACCATCGACCATCAGGCGCTGAGGAACCTACACTATGTGATGGAGCTTACGAACCACATCAAGGTGAGGTCCAGCGAGGAGGGTGAGGGAGAGGCCTCCGCAGACTACGCCCAGTTTCTCCCCTCTTTCGTGTGGACCGTGAGGGACTTCACTCTGGACCTCCTGTTTGATGGGAGGCGCccccccagacgagtacctggaGAAATCTCTGAAGATCCAGTCAGCAACTGCATACAAAATTTCTTCCCGACCCGGAAGTGCTTTGTGCTGAACCGACCCGTCTCCCAGAGCAAGCTGAAAGTCCTTGATGaactttgtgacagtcatctggaCCCTGGCTTTGTCCAACAAGTAACAGACTTTTGTAGCTACCTCTTCAACCAATCAAAGCTGAAGACACTCTCTGCTGGAGTCATAGTCACAGGAAGTGTGCTGGGGAACCTGGCGGTGATGTACGTGGAAGTCATTCGGAGCGGGAGCGTTCCGTGTTTGGAGAACGCAGTGGCAGCGCTGTCTAAGATTGAGAACTCTGCGGCGGTCGAGGAGTCTTGTGCCCTCTACAGGCGGCTGCTGGGAGAGCGGGTGGTCCCAGATCCAAAGACTGGAGCAGTAGGAGAGAAGGATCTTTCCGGCGTTCACGACGTGTGCCTACAGGAGGCACTGCAGCTCTTTAAGACCAACTCCTTCAAGGATGAAGACGAGCGCTATCAGAAAGATCTCATTGAACAGATAAAGGAGGTGTATCGTGGGAAATGTAGTGAGAACACAGAGCTCTCCCTCTGCAACTCCCTACTGCAGCGACTGTCAGAGAAGCTGGGTCACGCTTCCTACCTGAGACCTGGAGGATATGCAGACTACAGAATCCAGCTGGACTCCATTGTTCAAACCTACAGAGCTACACCTGGGAAAGGTGTACAGGAAGATGAGAAGAATGACACCTGGATCTTTGCCCTGGTCATTCTCCTGAGCAGCACCTTGGTGTACAACAGCATGAGGACCATCGACCATCAGGCGCTGAGGAACCTACACTATGTGACGGAGCTTACGAACCACATCAAGGTGAGGTCCAGCGAGGAGGGTGGGGGTGAGGCCTCCGCAGACTACGCCCAGTTTCTCCCCTCTTTCGTGTGGACCGTGAGGGACTTCACTCTGGACCTCCTGTTTGATGGGAGGCGCAtcaccccagacgagtacctggaGAAATCTCTGAAGATCCAGTCAGTGCTGGGGAACCTGGCGGTGATGTATGTGGAAGTCATTCGGAGCGGGAGCGTTCCGTGTTTGGAGAACGCAGTGGCAGCGCTGTCTAAGATCGAGAACTCTGCGGCGGTCGAGGAGTCTTTCGCCCTCTACAGGCGGCTGCTGGGAGAGCGGGTGGTCCCAGATCCAAAGACTGGAGCAGTAGGAGAGAAGGATCTTTCCGGCGTTCACGACGTGTGCCTACAGGAGGCACTGCGGCTCTTTAAGACCAACTCCTTTAAGGATAAAGACGAGCGCTATCAGAAAGATCTCATTGAACAGATAAAGGAGGTGTATCGTGGGAAATGTAGTGAGAACGCAGAGCTCTCCCTCTGCAACTCCCTACTGCAGCGGCTGTCAGAGAAGCTGGGTCACGCTTCCTACCTGAGACCTGGAGGATATGCAGACTACAGGATCCAGCTGGACTCCATTGTTCAAACCTACAGAGCTACACCTGGGAAAGGTGTACAGGCTCACCAAGTGCTGGAGGCTTTTTTACAGGACCGAGAGGAGAATATCAGAGACATTCGGAGGACTGACAAAGTTCTGACACAGAGAATGCATCTTCTGAAGGAGGACAAAACCCGAGCTGACAGACAGAGATATGAAGCAGAAGCAGAGGCGgctcagagagagaaaaaggTCATGGAGCGGAGGCTGGGAGGACAGTTTGTGGGAATGGAGAAGCCTGTCTGTCTCATTTCGAGTACCACTACAGGTGACCTGCAGGTAGAGAAGGAAGCCCTGGACATTCTGAACTCCATCAGGCAGCCTGTGGTGGTGGTGGCCATCGTAGGAATGTACCGCACAGGCAAATCTTACCTGATGAACAGACTGGCTGGGAAGCACAAAGGGTTCTCCTTGGGCTCCACCATCCAGTCTGAGACGAAGGGCATCTGGATGTGGTGTGTGCCCCACCCCCATAGAAAGGACCAAACTCTGGTTCTGCTGGACACTGAGGGTTTGGGGGATGTGGGAAAGGGAGACCAAACTCATGACACCTGGATCTTTTCTTTGGCCGTACTCTTAAGCAGCACGTTCGTCTACAACAGCATGGGCACCATCAATAACGAAGCTGTGATGAGCATGCACTATGTGACAGAGCTAACCGAGCACATAAAAGTGAAATCCAGCAAGGAGAAGGGGGAGGAGATGCCTTCTGACTACATCCGCTTCTTCCCCACCTTCGTCTGGGCTGTGAGGGACTTCACTCTGGAGCTGAAGATCGAGGGAAAGGCCGTCACTGCAGACCAGTACCTGGAGAACTCCCTAAAGCTGGTTAAAGGTAATTCCAAACATGTGGCGTACAGCAACGGCCCTCGGGAGTGCATCCGGAACTACTTCCCCACCAGGAAGTGCTTTGTGTTCGATCAGCCAGCCTCCAAAGAGAAGCTGAGGATCATAGAGGAACTGACTGACGCCGACCTGGAGACGGCCTTCGTCAGGCAAACGCTCGAATTCTGCAGCTACATTTTCAAACAATCAAAAGAGAAAACCATGACCGGAGGGCTTATGGTCACTGGACAGATGCTGGGGAACCTGGCGGTGATGTACGTGGACGCCATTCGGAGCGGGAGCGTTCCCTGTTTGGAGAACGCAGTGGCAGCGCTGTCTAAGATCGAGAACTCAGCGGCGGTCGAGGAGTCTTTCGCCATCTACAGGCGGCTGCTGGGAGAGCGGGTGAAACTGCCCACCAAGACTCAGGAGGAGCTCTCCAGCGTTCACGACGGCTGCCTGAAGGAGGCGCTGCAGCTCTTTATGAACCGCTCCTTCAAGGACAAGGACCAGGCTTTCCAGAAGCACCTCATGGAGCGTATTAAAGAAGAgtatgatgggaaatgtagtgagAATGCAGTGGCCTCCCAGATTCACTGCACCGATATACTGCAGCAGCTGTGGGAAAAGCTGGATCCTGAGTCCTTCATGAGACCCGGAGGATACGCAGACTACAGGGTCCAGCTGGACTCCATCATTCAAAACTACAGAGCTACACCTGGGAAAGGTGTACAGGCAGAACAAGTTCTGGAGATCTTCAtgaaggacaaaaatgatctggGCTCTTCCATCCTGAAGGCCGACATAGACCTCACAGAACAAGACAAGAAGCTGAAGGAGGAAAGAGCACGTGCGGAGATGGAGAAATTTAAGGCAGAGGTGGCCAGGAAGGAACAGGAAGACACGGCGAAACGTTTGGAGGATGCAGAGAGAGCTCACGTAGAGAACCAAAGCCAGCTGATGGAGAAGATGGAGAGGGACCGGCAAGCGATCCTGGAGGAGAACCAGAGAATTCTCGATCAGCGGCTAGAGGAGCAGAGAGCGCTGATATCAGAGGGGTTCGCGGCCAAAGCGCAGGCGATGGAGGCTCAGGTGCAGTCCTTACAGCGGGAGGTAGCGGCGTCCAAGAACAGAGGGGGTGGATGTGTCCTTCTGTAA

Transcript

SKAU_T00396030

GTGTACAACAGCAATGCCTCacccgggaatcaaacctgcaacctttagttGCAAGCCCATCTCCCTAACCACTTTACACCACTGTGTCCGTTTAATGTTCAGTGGCTAATATCAGTAGATTGGTGTGGCTATGTGGGTGTTTCTGGTTACAGGAAACTCATATGAGATGGAGGGACCAGTGTGTCTGATACAGAACACAAGCGCAGGTGAACTGCAGGTGAACCAGGAAGCCCTGGACATTCTGAGGTCAATCGGGCAGCCTGTGGTGGTGGTGTCCATCGTAGGCTTGTACCGCACGGGCAAATCTTACCTGATGAACAGACTGGCTGGAAAGACCACAGGGTTCTCCGTATGCTCCACCATCCAGTCTGAGACGAAGGGCATCTGGATGTGGTGTGTGCCCCACCCCCGCAGAGATGATGTAACTCTGGTCCTGCTGGACACAGAGGGTCTGGGGGATGTGGAAAAGGAAGATGAGAAGAATGACACCTGGATCTTTGCCCTGGTCATTCTCCTGAGCAGCACCTTGGTGTACAACAGCATGAGGACCATCGACCATCAGGCGCTGAGGAACCTACACTATGTGATGGAGCTTACGAACCACATCAAGGTGAGGTCCAGCGAGGAGGGTGAGGGAGAGGCCTCCGCAGACTACGCCCAGTTTCTCCCCTCTTTCGTGTGGACCGTGAGGGACTTCACTCTGGACCTCCTGTTTGATGGGAGGCGCccccccagacgagtacctggaGAAATCTCTGAAGATCCAGTCAGCAACTGCATACAAAATTTCTTCCCGACCCGGAAGTGCTTTGTGCTGAACCGACCCGTCTCCCAGAGCAAGCTGAAAGTCCTTGATGaactttgtgacagtcatctggaCCCTGGCTTTGTCCAACAAGTAACAGACTTTTGTAGCTACCTCTTCAACCAATCAAAGCTGAAGACACTCTCTGCTGGAGTCATAGTCACAGGAAGTGTGCTGGGGAACCTGGCGGTGATGTACGTGGAAGTCATTCGGAGCGGGAGCGTTCCGTGTTTGGAGAACGCAGTGGCAGCGCTGTCTAAGATTGAGAACTCTGCGGCGGTCGAGGAGTCTTGTGCCCTCTACAGGCGGCTGCTGGGAGAGCGGGTGGTCCCAGATCCAAAGACTGGAGCAGTAGGAGAGAAGGATCTTTCCGGCGTTCACGACGTGTGCCTACAGGAGGCACTGCAGCTCTTTAAGACCAACTCCTTCAAGGATGAAGACGAGCGCTATCAGAAAGATCTCATTGAACAGATAAAGGAGGTGTATCGTGGGAAATGTAGTGAGAACACAGAGCTCTCCCTCTGCAACTCCCTACTGCAGCGACTGTCAGAGAAGCTGGGTCACGCTTCCTACCTGAGACCTGGAGGATATGCAGACTACAGAATCCAGCTGGACTCCATTGTTCAAACCTACAGAGCTACACCTGGGAAAGGTGTACAGGAAGATGAGAAGAATGACACCTGGATCTTTGCCCTGGTCATTCTCCTGAGCAGCACCTTGGTGTACAACAGCATGAGGACCATCGACCATCAGGCGCTGAGGAACCTACACTATGTGACGGAGCTTACGAACCACATCAAGGTGAGGTCCAGCGAGGAGGGTGGGGGTGAGGCCTCCGCAGACTACGCCCAGTTTCTCCCCTCTTTCGTGTGGACCGTGAGGGACTTCACTCTGGACCTCCTGTTTGATGGGAGGCGCAtcaccccagacgagtacctggaGAAATCTCTGAAGATCCAGTCAGTGCTGGGGAACCTGGCGGTGATGTATGTGGAAGTCATTCGGAGCGGGAGCGTTCCGTGTTTGGAGAACGCAGTGGCAGCGCTGTCTAAGATCGAGAACTCTGCGGCGGTCGAGGAGTCTTTCGCCCTCTACAGGCGGCTGCTGGGAGAGCGGGTGGTCCCAGATCCAAAGACTGGAGCAGTAGGAGAGAAGGATCTTTCCGGCGTTCACGACGTGTGCCTACAGGAGGCACTGCGGCTCTTTAAGACCAACTCCTTTAAGGATAAAGACGAGCGCTATCAGAAAGATCTCATTGAACAGATAAAGGAGGTGTATCGTGGGAAATGTAGTGAGAACGCAGAGCTCTCCCTCTGCAACTCCCTACTGCAGCGGCTGTCAGAGAAGCTGGGTCACGCTTCCTACCTGAGACCTGGAGGATATGCAGACTACAGGATCCAGCTGGACTCCATTGTTCAAACCTACAGAGCTACACCTGGGAAAGGTGTACAGGCTCACCAAGTGCTGGAGGCTTTTTTACAGGACCGAGAGGAGAATATCAGAGACATTCGGAGGACTGACAAAGTTCTGACACAGAGAATGCATCTTCTGAAGGAGGACAAAACCCGAGCTGACAGACAGAGATATGAAGCAGAAGCAGAGGCGgctcagagagagaaaaaggTCATGGAGCGGAGGCTGGGAGGACAGTTTGTGGGAATGGAGAAGCCTGTCTGTCTCATTTCGAGTACCACTACAGGTGACCTGCAGGTAGAGAAGGAAGCCCTGGACATTCTGAACTCCATCAGGCAGCCTGTGGTGGTGGTGGCCATCGTAGGAATGTACCGCACAGGCAAATCTTACCTGATGAACAGACTGGCTGGGAAGCACAAAGGGTTCTCCTTGGGCTCCACCATCCAGTCTGAGACGAAGGGCATCTGGATGTGGTGTGTGCCCCACCCCCATAGAAAGGACCAAACTCTGGTTCTGCTGGACACTGAGGGTTTGGGGGATGTGGGAAAGGGAGACCAAACTCATGACACCTGGATCTTTTCTTTGGCCGTACTCTTAAGCAGCACGTTCGTCTACAACAGCATGGGCACCATCAATAACGAAGCTGTGATGAGCATGCACTATGTGACAGAGCTAACCGAGCACATAAAAGTGAAATCCAGCAAGGAGAAGGGGGAGGAGATGCCTTCTGACTACATCCGCTTCTTCCCCACCTTCGTCTGGGCTGTGAGGGACTTCACTCTGGAGCTGAAGATCGAGGGAAAGGCCGTCACTGCAGACCAGTACCTGGAGAACTCCCTAAAGCTGGTTAAAGGTAATTCCAAACATGTGGCGTACAGCAACGGCCCTCGGGAGTGCATCCGGAACTACTTCCCCACCAGGAAGTGCTTTGTGTTCGATCAGCCAGCCTCCAAAGAGAAGCTGAGGATCATAGAGGAACTGACTGACGCCGACCTGGAGACGGCCTTCGTCAGGCAAACGCTCGAATTCTGCAGCTACATTTTCAAACAATCAAAAGAGAAAACCATGACCGGAGGGCTTATGGTCACTGGACAGATGCTGGGGAACCTGGCGGTGATGTACGTGGACGCCATTCGGAGCGGGAGCGTTCCCTGTTTGGAGAACGCAGTGGCAGCGCTGTCTAAGATCGAGAACTCAGCGGCGGTCGAGGAGTCTTTCGCCATCTACAGGCGGCTGCTGGGAGAGCGGGTGAAACTGCCCACCAAGACTCAGGAGGAGCTCTCCAGCGTTCACGACGGCTGCCTGAAGGAGGCGCTGCAGCTCTTTATGAACCGCTCCTTCAAGGACAAGGACCAGGCTTTCCAGAAGCACCTCATGGAGCGTATTAAAGAAGAgtatgatgggaaatgtagtgagAATGCAGTGGCCTCCCAGATTCACTGCACCGATATACTGCAGCAGCTGTGGGAAAAGCTGGATCCTGAGTCCTTCATGAGACCCGGAGGATACGCAGACTACAGGGTCCAGCTGGACTCCATCATTCAAAACTACAGAGCTACACCTGGGAAAGGTGTACAGGCAGAACAAGTTCTGGAGATCTTCAtgaaggacaaaaatgatctggGCTCTTCCATCCTGAAGGCCGACATAGACCTCACAGAACAAGACAAGAAGCTGAAGGAGGAAAGAGCACGTGCGGAGATGGAGAAATTTAAGGCAGAGGTGGCCAGGAAGGAACAGGAAGACACGGCGAAACGTTTGGAGGATGCAGAGAGAGCTCACGTAGAGAACCAAAGCCAGCTGATGGAGAAGATGGAGAGGGACCGGCAAGCGATCCTGGAGGAGAACCAGAGAATTCTCGATCAGCGGCTAGAGGAGCAGAGAGCGCTGATATCAGAGGGGTTCGCGGCCAAAGCGCAGGCGATGGAGGCTCAGGTGCAGTCCTTACAGCGGGAGGTAGCGGCGTCCAAGAACAGAGGGGGTGGATGTGTCCTTCTGTAATACCATCCAGAGCGGCGATGGAGACCTCCTGTTTAATGTCATATTTGCAGGTCTACGTCAGTATCAAACAATAGCAGTAACTGAATAAATACCTATCTGTACGTTTCTTGAAATCGTTACTTGAACTATTGGCCATAAATGCTACATAATGCTGTCTTAACCATGATTGTATTTCTCTTCAGACTCCTCTCAGTCATCACCGACCGTTTTTTTGATAGACGAGTCacaatttttcttcttctttaactataaacttcacccctagtggttgagatgtatccgccgcaattacagtattcatgttcgtctgaaactataaactacagctttaagaaaaccctgtaaattttgacgcagtattttttaaaagggtagcctcttgcgaaaacctcagcttctccagttacactgcagtgcaataaattaggagggcgctattaatagcccaaagcacttacgaccctcctctggctacagccagactgtaaaatgcaccgtttatacacgctgagaaaatcatgttcacatatagaaacaataatatttttttaaaacgt

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02263	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan
PF02841	GBP_C	Guanylate-binding protein, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003191	Domain	Guanylate-binding protein/Atlastin, C-terminal	Interproscan
IPR015894	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030386	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan
IPR036543	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan
IPR037684	Domain	Guanylate-binding protein, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-