Gene detail

Detailed information of SKAU_T00393470 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00393470	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37	CM056395.1	21147049	21155192	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00393470

ctcagtgcttcacgaagcctcatttcgccatcactacaatccgccttgcttcctggttcctCGTTAAAAACAGAGTTTCCAGACCTCTTTCCTTTTCTCGCGCACCCGTTTTAATCTAGATTCACGTCCGACAGGCATAAAGCCCAGACGTGAATCGTGTTTAGCGTGTTTAGCGTGTTTAGCGTGTTTATCTATTTCGTTTCTCTGATAAGATTCCGGTCGTTTTCCTCCCGCTCCTACAGAATTTTGAATTACCGTCCCGACCTCCTTTTCGCGTCCTCTCCACCCGTTCTGTGGACTACTCACCCAGGGATTCTATATAGTTCTATGGATTCtacccatagaaatatatattaacagtTCTATGATTCTACCTACCGAAATCTCCTGTGTCGTCATCATTTCTGAGCATTGACCTTTAAACTCCATACAGGAAACTAGTATATTTACGCTTTAGAAAGTTATAACTTGATttagtttttgtgtttgttttcttgTATATCGATTGAGTAATCTATACCAGCAAAttattaataatttttattttttaggtttttattgAAAAACCTGGTGACGTAAAGCGCAAATAACGTAAAGTGCAAATGGTGTCGTAACGCGCAAATAACATACACGCCAGTCCTTCTCcacacagtcacacgcacacacggctGTTGTCTTCCTAGCCGAGTGTTGTTGGTAGCCGCTTGGCGCGGTAGCAGGCTAGCTAGCTGGCTCGCTGCGAATGACAGGGCGAATTTTAGGCAAATGCTTTCACCAGAGGAAATCTTGATTTTTCCTAAAGTCTGAATCACACGTTAGGCTGGATATGTGATCGCGGAGGtcgtagctaattagctaacaaGCTAAACGTTTTACCCGAATCGCGACTGTGTTGTTTTTCTCTCTTAGCCGAGAGACTAAAGTAGTTAGCCAGGCATCCAACGTTAGCAAAGCCATTGAGTTCAGATCGTGTTCCAGCCAAAAGAGGATGAACTGGATTTTCCCTTTATCCAAGGGGTCTGGACCACTTCCACCTTTGAACAGTTTACAACAGCAACGGCAGAGACAGATCGACTCACTCAAAGCTGCCCATTCCAACATAGCTGAGATTCAGAAGGATGTGGAATACAGGATTCCCTTCACAGTCAACAACACAACTATCAGCGTTAACATTTTGCTTCCACCCCAGTTTCCCCAGGAGAAACCGGCGGTCAGCATATATCCGCCTGTTGCCCACCATTTAGTGGACACGCACAATGGCAGCATGGTTACCAGTCCCCTCATAACAAATtTTGGAATGCACTCCGATTTGGGGAAGGTCATACAGAGTCTGCTGGATGAGTTTTGGAAGAACCCCCCTGTCCTGATCCCTGGTCCCACCGGCTTTCCCTTCATGTACAAACCGACGGGGATGCCCCCGTACCCTCCCCAGGGCTTCCATTTCCTCCCTGCGTTCCCACCTCAGGACACCCCCCGACCCGTGGGCCCCGCCCCCACGCCTCACCCAGGGGCGGAGCCACACGGCCCTCCGCGGGCCGCGGCACCTGCCTACGGCCTGATTACGGACCTGCCTCTCCCAGTGCCCACCGCAGATGCCCAGGCAGGGCTAAACGGCCACATGTACAAGATGCCTGAGATTCCTGAGTCTTTTCCGGAGCTTTCTGAAGCGAGCATGTCTCAGCTGAAGGACATGAATGACCAGGAGGACATTCTGCTGGAGTTTTTCACCTGCCTCCCGCAGCTGAATCAGGTCACCACGGACAAGGAGGAGCTGGTCAACAGCATCGTCGACATAGCCAAGAAGAACCTGTTACTGGAGCCACAGCTGGAGGGAAGGAGGCAGGAAATGCTGTTCAAATATGAGCAGGTGACTCAGATGAAATCTTCCTTTGAGACGAAGATGCAGAGACAACATGAGCTCAGTGAGaGCTGCAGTCTGAGTGCTCTGCAGGCCCGGCTGAAGGTAGCAGCGCACCAGGCTGAGGAGGAGTCTGAGGAGACGGCCGAGCACTTCCTCGAGGGCAAGACGGAGATCGACGACTTCCTCGCTGCTTTCATGGAGAAGAGAACGCTTTGCCACTGCAGACGCGCTAAAGAGGAGAAGCTTCAGCAGTCAATCGGCGCTCACGGACAGTTCCACACGCCGCACTAGACCCCAGCTCTCCTCATCCTCTCTTTGTTTTTTAAGgTTTGAATTTGATCTACCAGCACAGCGCCGATGAAGATGAGAAAAGCACATCTTGTATTCCGTAGACGGGGGGGATCTGAACAGCCACACAGGATTCGGGAATTTAATTGCGTCAGAACTAGCGAGATGTTTGAACTAATTTTGGAATGAAAGTCCAGATAaagtgtgtttggggggggaaaGGCCAAATTTACTTGAATTCCAACTACAACTATGTTAATGCTGCCGCATAAGTACGATGAATACTGTAtttaaataatgttaataataGCCTTTATTATAATCGAAGACGATGTATTATATGTTATTTAATTTGTTAGGTAATAAACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07200	Mod_r	Modifier of rudimentary (Mod(r)) protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009851	Domain	Modifier of rudimentary, Modr	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR029012	Homologous_superfamily	Helix hairpin bin domain superfamily	Interproscan
IPR037202	Homologous_superfamily	ESCRT assembly domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13678	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000813	Cellular Component	ESCRT I complex	Interproscan
GO:0006612	Biological Process	protein targeting to membrane	Interproscan
GO:0006623	Biological Process	protein targeting to vacuole	Interproscan
GO:0043162	Biological Process	ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-