Gene detail

Detailed information of SKAU_T00391120 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00391120	CYTOCHROME P450 508A4-RELATED	CM056395.1	13302848	13315010	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00391120

ATGCTAAGGCAGGCATGGCAGGAGCTACAATGTGTTACTTTACTCTCGAGTGTATCGTTATACTTCGTGGCATTGGCCGTGTTCTTATTAGTGTTTTACGTGTTACACAGATTAAAAAAACGAAAATTCTCTAACGTTCCTCCCGGTCCAAAACCCTGGCCTTTGATCGGCAATTTCGCACGGTTTCTTGTCCCTAGTTTTGTCTCGAAAAGGTTTGGGGGTCATAGCGAAAAGCGTGGACAAAGGAAATCCGTTGCGTCCCCACAAGTTTTTCTAATGGAACTATCGAAACACTATGGCAATATCTACAGCCTTTTTATTGGCAGTCAACTGATCGTTATACTGACAGGCTACGAAGTGGTCAGGGACGCCCTCTCAAATCGAGCACAAGTATTCTCGGACCGACCAGATCTTCCTCTTATAACTACTATGACTAAACGGAAAGGTATAGTGTTTGCCCCCTATGGTCCCGTGTGGCGACAGCAGCGAAAGTTCTGCCACGCATCTTTGCGGAGTTTTGGGCTGGGTCGGTTGAGCCTGGAGCCCcgcatcctggaggagctggcaGTAGTGAAGACTGAGCTGCAGAGAATCTACGCAGAGGGAGAGGGGACAGGCGTCGACTTGGCACCGCTTGTCAGCAACGCGGTGTCTAACGTGATCTCCTCCATTAGCCTCGGTCAGCGCTTCCACCACGGGGATCGCCAGTTCCGCACCCTGCTGGACCTCATGGCCAGGGGCCTGGAGCTCTGCATCAACAGCCCGGCCGTCCTCATAAACGTCTTCCCCTGGCTGTACCACCTGCCCTTCGGTGCCTTCAGGGAAATCCGGCAGGTGGAGAGGGACATTACGGTCTTCCTGAAGGAAATCATTGCCCAGCACAGGTCCAGTTTAGACCCGGACAGCCCCCGTGACCTTATCGACATGTACCTGGTGGAGATGGCTCAGCAGCAAGAGAGCGTGGGAACTGGGGAAACCAGCTTCTCAGAGGATTATCTCTTCTACATCATTGGCGATCTCTTCGTTGCCGGAACTGACACCACCACCAACACTGTTCTCTGGATGCTGCTGTACATGAGCGTATACCCAGACATTCAAGAGAAGGTTCAGGCAGAGATTGATTCAgttgtggggtcagacagggtccCCTCACTGACAGACAAGGCCAGCTGTCCTTTCACTGAGGCCACTATTATGGAGGTCCAGAGGATGACTGCAGTCGTTCCCCTGGCGATACCTCACATGGCCTCAGAGACCACAGTGTTTCGAGGATACACCATCCCAAAAGGAACAATCATTATCCCAAACCTCTGGTCTGTCCACCGAGATCCAACTGTGTGGGAAAACCCAGACGACTTCAATCCAGCCAGGTTCTTGGATGAAAATGGACAAGTTTTGAGAAAAGAGTATTTCATTCCATTTGGAATAGGCCGCAGGTTGTGTATGGGTGAGCAGCTGGCTAAGATGGAGCTCTTCCTGATGTTCTCAAACCTGATGCAGGCTTTCAGCTTCAGGATACCAGACGGGCTGCCACCACCCTCCATGGACGGGCGATTTGGTCTCACGCTCGCCCCATGCCCTTACACTGTCCACGTTTCCGCCTGGAAGATCATGGCTTTCGTTACGCACAAATTTATCAGAACGCTGTCCTCTACTAGTATACGAAATGCGGCGATACAACACGTTACGATCATTGGAGGTGGACAGATGGGCGCAGGGATTGCACAGGTTGCTGCAGCCACCGGTCACTCGGTTGTGTTGGTGGATACTTCAGAAGACATCTTGAAGAAGTCCACCAAAGGCATTGAGGGCATTTTGAAAAGAATGGCCAAGAAGAAGTTTGCAGACAAGCCGGAGGTAGGTGAGGAGTTCATTCAGAAGGTAATGAAGAATGTGTCAACAAGCACCGATGCCGCATCAGTGGTTCCTGGCACCGACTTGGTACTGGAGGCCATAGTGGAGAACCTCAAGGTCAAGCAGGGCCTCTTTGCTAGTCTGGACAAAGTGGCCCCTGAGCACACGATATTTGCAAGCAATACCTCATCTCTCCCCATCGCAGACATCGCCAGCTCCACAGCCAGGCTGGACCGGTTTGGAGGACTTCACTTCTTCAACCCTGTTCCCTTGATGAAACTGGTGGAGGTTGTTGAAACGCCAATGACGAGTCAGGCCACCTTCAATACTCTCTATGACTTCAGCAAAGCTTTGGGAAAACATCCAGTGTCTTGTAAAGACACTCCTGGATTTATGGTGAATCGCCTCCTGGTGCCTTACCTGATGGAAGCGGTCCGACTACACGAGCGGGGCCATGGATCAAAGGAGGACATTGATGTGGCCATGAAACTTGGCGCCGGATACCCCATGGGCCCGTTTGAGCTGCTTGATTATGTTGGACTGGACACTGGAAAATTCATCATTGACGGCTGGCATGCTATGGAGCCCGAGAACCCCATGTTCAGCCCGAGCCCCATGTTGAACAAACTTGTGGAGGAGGGGAAGTTTGGGAAGAAGACCGGCGAAGGATTCTATAAGTACAAGTAG

Transcript

SKAU_T00391120

CAATGAAGAAGCAGACCAACCACAACATACACAAAACTGGCATGTCTGCTGCGGCTGGAAGCAAACATCTTATGGATAAGCTGGTTtctacctatttttatacagtctatggtttatacACGGATTTCGTATTGTGAATCGTAACGTTGAATAACCTAGACGCCATGCTAAGGCAGGCATGGCAGGAGCTACAATGTGTTACTTTACTCTCGAGTGTATCGTTATACTTCGTGGCATTGGCCGTGTTCTTATTAGTGTTTTACGTGTTACACAGATTAAAAAAACGAAAATTCTCTAACGTTCCTCCCGGTCCAAAACCCTGGCCTTTGATCGGCAATTTCGCACGGTTTCTTGTCCCTAGTTTTGTCTCGAAAAGGTTTGGGGGTCATAGCGAAAAGCGTGGACAAAGGAAATCCGTTGCGTCCCCACAAGTTTTTCTAATGGAACTATCGAAACACTATGGCAATATCTACAGCCTTTTTATTGGCAGTCAACTGATCGTTATACTGACAGGCTACGAAGTGGTCAGGGACGCCCTCTCAAATCGAGCACAAGTATTCTCGGACCGACCAGATCTTCCTCTTATAACTACTATGACTAAACGGAAAGGTATAGTGTTTGCCCCCTATGGTCCCGTGTGGCGACAGCAGCGAAAGTTCTGCCACGCATCTTTGCGGAGTTTTGGGCTGGGTCGGTTGAGCCTGGAGCCCcgcatcctggaggagctggcaGTAGTGAAGACTGAGCTGCAGAGAATCTACGCAGAGGGAGAGGGGACAGGCGTCGACTTGGCACCGCTTGTCAGCAACGCGGTGTCTAACGTGATCTCCTCCATTAGCCTCGGTCAGCGCTTCCACCACGGGGATCGCCAGTTCCGCACCCTGCTGGACCTCATGGCCAGGGGCCTGGAGCTCTGCATCAACAGCCCGGCCGTCCTCATAAACGTCTTCCCCTGGCTGTACCACCTGCCCTTCGGTGCCTTCAGGGAAATCCGGCAGGTGGAGAGGGACATTACGGTCTTCCTGAAGGAAATCATTGCCCAGCACAGGTCCAGTTTAGACCCGGACAGCCCCCGTGACCTTATCGACATGTACCTGGTGGAGATGGCTCAGCAGCAAGAGAGCGTGGGAACTGGGGAAACCAGCTTCTCAGAGGATTATCTCTTCTACATCATTGGCGATCTCTTCGTTGCCGGAACTGACACCACCACCAACACTGTTCTCTGGATGCTGCTGTACATGAGCGTATACCCAGACATTCAAGAGAAGGTTCAGGCAGAGATTGATTCAgttgtggggtcagacagggtccCCTCACTGACAGACAAGGCCAGCTGTCCTTTCACTGAGGCCACTATTATGGAGGTCCAGAGGATGACTGCAGTCGTTCCCCTGGCGATACCTCACATGGCCTCAGAGACCACAGTGTTTCGAGGATACACCATCCCAAAAGGAACAATCATTATCCCAAACCTCTGGTCTGTCCACCGAGATCCAACTGTGTGGGAAAACCCAGACGACTTCAATCCAGCCAGGTTCTTGGATGAAAATGGACAAGTTTTGAGAAAAGAGTATTTCATTCCATTTGGAATAGGCCGCAGGTTGTGTATGGGTGAGCAGCTGGCTAAGATGGAGCTCTTCCTGATGTTCTCAAACCTGATGCAGGCTTTCAGCTTCAGGATACCAGACGGGCTGCCACCACCCTCCATGGACGGGCGATTTGGTCTCACGCTCGCCCCATGCCCTTACACTGTCCACGTTTCCGCCTGGAAGATCATGGCTTTCGTTACGCACAAATTTATCAGAACGCTGTCCTCTACTAGTATACGAAATGCGGCGATACAACACGTTACGATCATTGGAGGTGGACAGATGGGCGCAGGGATTGCACAGGTTGCTGCAGCCACCGGTCACTCGGTTGTGTTGGTGGATACTTCAGAAGACATCTTGAAGAAGTCCACCAAAGGCATTGAGGGCATTTTGAAAAGAATGGCCAAGAAGAAGTTTGCAGACAAGCCGGAGGTAGGTGAGGAGTTCATTCAGAAGGTAATGAAGAATGTGTCAACAAGCACCGATGCCGCATCAGTGGTTCCTGGCACCGACTTGGTACTGGAGGCCATAGTGGAGAACCTCAAGGTCAAGCAGGGCCTCTTTGCTAGTCTGGACAAAGTGGCCCCTGAGCACACGATATTTGCAAGCAATACCTCATCTCTCCCCATCGCAGACATCGCCAGCTCCACAGCCAGGCTGGACCGGTTTGGAGGACTTCACTTCTTCAACCCTGTTCCCTTGATGAAACTGGTGGAGGTTGTTGAAACGCCAATGACGAGTCAGGCCACCTTCAATACTCTCTATGACTTCAGCAAAGCTTTGGGAAAACATCCAGTGTCTTGTAAAGACACTCCTGGATTTATGGTGAATCGCCTCCTGGTGCCTTACCTGATGGAAGCGGTCCGACTACACGAGCGGGGCCATGGATCAAAGGAGGACATTGATGTGGCCATGAAACTTGGCGCCGGATACCCCATGGGCCCGTTTGAGCTGCTTGATTATGTTGGACTGGACACTGGAAAATTCATCATTGACGGCTGGCATGCTATGGAGCCCGAGAACCCCATGTTCAGCCCGAGCCCCATGTTGAACAAACTTGTGGAGGAGGGGAAGTTTGGGAAGAAGACCGGCGAAGGATTCTATAAGTACAAGTAGCACTTTATGGCATGACCAGAAGCTGAGCATTAGCGGTTTCAGAGCCGAGATCACCCCTGAGATAAACCTGCGAGTGCCCAGAGCTGGAGGGCGAGGCAGTCAGTGGCTGCATCATTGAAATTCCGGTAATTCAGGTGCAACACCGAGTGCCTTTCTGAACAACTGTTGTCTCTTTTTGTGCGCGCCTAAATTAGTGAGAATGAGTCTTTCTATAATGCAGTTTGTCCAATTAAAGGGATGTTTTTCAAATGTATACCTTGCTTGTTTTTGTTGGTatacaccaaggggccaagactgggctttcgttttgaagctcacttcctg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067	p450	Cytochrome P450	Domain	Interproscan
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001128	Family	Cytochrome P450	Interproscan
IPR002401	Family	Cytochrome P450, E-class, group I	Interproscan
IPR006108	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR006180	Conserved_site	3-hydroxyacyl-CoA dehydrogenase, conserved site	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR013328	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR017972	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR050182	Family	Cytochrome P450 family 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24300	CYTOCHROME P450 508A4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006082	Biological Process	organic acid metabolic process	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0006805	Biological Process	xenobiotic metabolic process	Interproscan
GO:0008395	Molecular Function	steroid hydroxylase activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0016712	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-