Gene detail

Detailed information of SKAU_T00390580 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00390580	BETA-MANNOSIDASE	CM056395.1	11697405	11718540	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00390580

Transcript

SKAU_T00390580

ATGATTCCATGTTCTGAAGAAGACGTGCCTGGCTGTGTACATACAGGGCTATTGAAACAGGGGCTTATTCAGGACCCTTACTACAGGTTCAATGACTTGGCCTACAGGTGGATTTCTCTTGACAATTGGACATACACAACCACATTCCCTGTGCCAGCTGAGATAAGGAGCAAACAGAAGGTGGATTTGGTCTTTGAGGGTGTGGACACGgtttcctccatctccctcaatGGCGTGACCGTGGGGAAGACGGACAACATGTTTCGCCGATACGGCTTTGACGTCCGGGGACTGCTGAGGGACCAGGGGAACGTCCTCAGTGTCAGCCTCTCGTCCGCCGTGGCGTACGCGGCGGAGCGCAGCCGGGCTCACTCCTCCTACCCGGTCCCTCCCGATTGCCCACCGCCTGTGCAGAAAGGAGAGTGTCACGTCAACTTCATCAGGAAGgcccaGAGCTCTTTCAGCTGGGACTGGGGGCCGTCCTTCCCCACCCTGGGCCTCTGGAGGGGCGTGCGATTGGACGCTTGCGACGTGCTGCGGCTGCTGTATCTCGCCGCTACACCAGCTCAAGAGGGTGACCCCTCCCATTGGAGTGTGGAGGTGGAGCTGCACAGTTACACATTGGTGTCAGCACTGGGATACGTGACTCTGCTCATTCCTGAACTAGCTACCCAACAAACCTTCCAGGCCTATCTGCCAGCAGGCCAGAGCAGGAGCACGTTTGTCCTCCCTATCAACAAGAGCGCTGAAGTGGGCCTGTGGTGGCCCGTGGGCCACGGGCCGCAGCGCCAATACAACATGAGCATACAGGTGAAGCTGGACGGAGGCATCGCCATCGACACTAAAACCCTGGTGTCTTTCCGTACAGTGGAGCTGGTTCAGGAGCCCATTGCCGGGTCACCAGGATTAAGTTTCTACTTCAGGATCAATGGGAGGCCCATCTTCCTCAAGGGCTCCAACTGGATCCCAGCCCACGCCTTCCAGGACCAGGTCACGCCCGGCATGCTGAGGAACCTTCTGCAGTCAGCTGTGGATGCCAACATGAACACGCTGAGAGTCTGGGGGGGAGGAGTCTACGAGCAAGAACATTTCTACAGTCTGTGCGATGAACTGGGAGTCATGATTTGGCAGGACTTCATGTTCGCCTGCGCCCTGTACCCGACTGACTCTGAGTTCATAAAGACAGTGAGACAGGAGGTCACTCACCAGGTGAGGAGGCTGAAATCCCACCCCTCCATCATCGTGTGGAGCGCGAACAACGAGAACGAGGCCGCCATCGCCACGGACTGGTTCAGCATCCCCGCCTCCCAGCAGCCCCGCTACTTGAAAGACTACGTCACGCTCTACGTCAACAACATCAGGGAGATTGTTCAGAAGGAGGACGGGAGTCGCCCGTTCCTCACCTCCAGCCCCACCAACGGGGCCGAGTCAGAGCGGGAGGGATGGGTGGCCCTGGACCCTTATGACACCCATTTTGGGGACACGCACTTCTACAGCTACCTGCAGGACTGCTGGGATTGGACGGGCTTTCCACGTACCCGCTTCGCCTCGGAGTACGGCTTCCAGTCCTGGCCCTCCTTCTCAACCCTGCAGAAGATTTCTGCACCTGAAGACTGGAGCTACCAGAGTGACTTCTCCTCCCACCGGCAGCACCACGACACGGGCAACCAGCAGATGCTGCTGCAGGCCAAGCTGCATTTCCACCTGCCCAACTCCACCGATCCTCTGCAGACCTACAGAGACACGCTCTACCTCACGCAGgtgATGCAGGCGCAGTGTGTGAAGGCTCAGACAGAGTTCTACCGTAGGAGTCGTAGCGAAATCATAAATGGGAAAGGCAAGACCATGGGCGCCCTCTACTGGCAGCTCAATGACATCTGGCAAGGCCCCTCCTGGTCCTCTCTAGAGTTTGGCGGGAAGTGGAAGATGCTGCATTATTTTGCCCGAGACTTCTTTGCCCCTGTGCTGCCGGTGGGGTTCCAGGACCAGGGGCTTCTTCTGATCTACGCTGTGTCcgacctgacctctgacctcacccTCAGGGTCGTGGTTACAGTGTACCAGTGGAGCAGCTTGGAGCCGGTGTGCACTCTAACCTCCAGCGCGGTGCTGGTGAGCGGAGGGAGTGCCCTGCCTGTGTATAAGCAGTCTGTGGGCGCCCTGCTGGCGGGATGCGGGAACTGCACCACGCTGACCTGCGTCCTGACCTTTCACCTAGAGGACTCCAAAGGCCAGCGTGGCCCGACAAACCACCTCTTCCTCAGCTCTCCCAGGGAGGCACAAGGCCTGCAGACACCCAACATCACAACAAGCATCTGGCAGGACGGGGGGACTTACGCAATCACGCTCCGCACCTCTGCGATCACTCCCTTCCTGTGGCTGGACGTCGGGGACATCCCCGGACGCTTCGACTCCAACGGCTTCCTCATGGTGACCAGGAGCCGTACGGTGCGCTTCTACCCCTGGGGTCCCACCAGCGCCGCCCTGCTGTCCCGCGCCCTGCACGTCACCTCACTCAGGGGCGTGTACTGAGTACACAACCAAAGCGTACTGAACACTTTACCTCAGGGGAAATCTTTATTTTTTCTATGATTATGATTGTTATTTGAAAACACCATTTTAGAAGTAATTTCCTAGTGTAATAGTTGACCTGGTACAATGGTGTTTTTGTAGGCGTGCGACTGGGTGGCCCGTGGATGGGCCCCAAAATCTGGTCTGGAATCCAAAGTGTGGCGGCAGACCCACAGAGTGGTACATACCTGGCCCTTAGCTTTGCCCGGAAACGGGATCGCAGTCGTCGGTCTCTCATTGTGCAACAGCACCCCCTCCTGGCCGGTcaggcacctgcagtctgcctgcttATCCTGCATATGAAGCGTTTCTCGGTCTGCCTGTGGAAAGAAGCAGCCGCTTGACAGCACACGTTTCAGAGGAGAGTGTGAGCCTGTCTGCGATGAGTCTGGTTTATGAGCACAGCTGGGCCTTCCAGACCGGGAAccaggggaaaatgaaaaaaggacACAGCATGGGTTACACTAATGAGagcattacttttttttaaacaaaaatacatttcccatCAATACACTGATGTTGAAATGTTGCTTGTGCTACACTGCAGTTTTGTCTCTGCACCTTGAAGTGGTTTTGGTGGCAGTAGTTGGGTGATTCACCCAGGCTGTGAATGTGTGGAGGAGGAGTTTGTTTCAAAAGTTGCCATTGATTTACAAATGAATGGTTACAGATGAATGTAGACTGCTTAACAGCACAAATGTCGGAAAGCACTTTATACTTTTCAGAATTTTATTATAAAAGTATTACAATCAGCCAATTAAAAGCAAACGATGAACACGGTTTGTGGCTTTGGCCAACGCCTCCATGTGTATATACAAAGTGGAATTTCAAAGAACGGGTATAAATATGCTAGCCTGATACATCATAGTGCAGGGCATGCTAGTTTCTTTCCAGTAGAAACAAGAAATGAAGTACGAATGACAAAACAACTTTTGTTAGATTTTGTTTGACAGCAATAGTAATATTGTATCTTTAGTTCTAAAAGAatagtcttttaaaaaaaagaaattctaaCCAGGGCTCTTTCCTTAAAGGTAATCTTCCATTCAGGGAAGCATGCTCTGGTGTCGACACCAATCAGAGAATTCGGAagatttttattttctgtgctCATTTCCTTGTTTAATCTTTAGCAACTTTTCCTGTCATACAGGTTCACTTATTATGAATAAGCATTTCTATGGTCTCTGTACTGCACTGCATagttcatttaaaatgaaagattaAGGCTATTATCTCAGACAACAAAAACGCATTGAATCTCCAGGTGGACAAGCTTACGGTTGGGCTTCACACGAGTACCAAGTTAGTGACCAAAAAAATGCCACTGTCAAAATAATAAACACTGAAACATCCCAAAAAATACATTCCTTTTTTAAATGCATAGTGGCAGACTTTCAACATATGACAGGTAAAACAGAAACATAAATTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02836	Glyco_hydro_2_C	Glycosyl hydrolases family 2, TIM barrel domain	Domain	Interproscan
PF17753	Ig_mannosidase	Ig-fold domain	Domain	Interproscan
PF17786	Mannosidase_ig	Mannosidase Ig/CBM-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006103	Domain	Glycoside hydrolase family 2, catalytic domain	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR036156	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan
IPR041447	Domain	Mannosidase Ig/CBM-like domain	Interproscan
IPR041625	Domain	Beta-mannosidase, Ig-fold domain	Interproscan
IPR050887	Family	Beta-mannosidase glycosyl hydrolases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43730	BETA-MANNOSIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004567	Molecular Function	beta-mannosidase activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006516	Biological Process	glycoprotein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-