Gene detail

Detailed information of SKAU_T00389350 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00389350	MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7	CM056395.1	8364068	8378643	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00389350

ATGAGCATGGCTGGGCATGGTACACAAGGCTCCGTGCTCAGCCCATTGTTACAGACGCATGAGCTGCGTGTCGCATGCACGTCTTGCTATGAACAGCCCCTTGACGTCACTTCCTCCGCCGTCCACGTTTCTCACTTTTGCTCGCGAAACATCTTACTGGTCAGgcggagaggaggaagagaggcagACTGGAGACATGTTTCCCCCAGGCCTAAGTACCGAAGCCCCCAAAAGTATGTGAAGTGCTTATAcacaggggagggagggagttgCCTCCAGTACGGTAAGCGCTGCACTTTTGCCAAAAGTCATGAGGAGGCGGACGTGTGGAATTTTCTAAAAAGTAGAGGGCTTGAGAACAGCTTTCTCATTCGCCTGGTTTGGAAGGCTCAGAGCGGggaagacgaggaggaggagtTGGGCGTGGCAGAGAGGATTCAGAGCCTCTCCAATGGCCACTTTGTCCACCTCTGCCACGCCTGCTTCCACGGCAGCCCCAGGAAGATTACCCCCGAGCGTTCTGCCAAGGTTTGCGGGCACCCCCCCGAGCCCGCTCTGGTCCTCATCCAAGTGAGCAGATGCCAAGGTGAAAAAGTGACATTCAGCGCGATCCGGCCCCTCCCCCCGGGCCGGCCCATCCAGCAGTTCCGCCACTGTTGGCACGTGGAGAGAGGTGCCCCGTGCCAGGCCGAGTGCACGTTCCCCCACAGTGAGGCCGAGATGGCCGTGTGGACGGCCGAGAGAAACGAGGGCCTGGACCGGAACCAACTGGTCACGGAACTTGACGAATTGGAGGGCCAGGAATCGCTAGAGGAACCCCGGCCCCGGTTCTCCTGTGCCGTGTGCCAGCTCCAGTTCTCCTCTCAGGACGGCTTCATCAGCCACTGCTCCTCCCTCGCTCACGAGAGGAGGTACTGCGACGATGACGACACGCCCGCTGAGTGGAAGCACCGACGCCCACCAGATCACAGCCAAGCCCTTGAGTTGTGTAAAAGACCAGAAACCTGTGAATATGGAGAGAACTGCACAGCAGCTCACTCCACCGAGGAGCTCCAGGAATGGTGCCTGAGGATGAGGATGATTCGCAGGAAGAGGAAGGCTGCCCAGGAGCAGGGCCTGCTGTCATACCGGGACCAACTGCTGATGGAATACAGGGACAGCCTCAATGAAGTTCTCATTAGACCCCTGAAGGCTGCTGCCCTGTTGAAGCAGGAGCCAGGGGCCACATTCACACTGGGGGACAGGACCGACAGGGACCCCTGTACCTACTCAGATGGGAGCCTCTTCTGCACCTTGGGCAAGTCACACTCCCTTTCCGTCTCCTTCTCATCCACCTGCCCAGGACACTACGAGCAGTGGCTGGCTCTGGACTTCGACACAAGGCCTGTGTTGCTGCGGAAGATCCGGGTGGGTGTGGGTGAGGAGCAGAGCTTCCCAGAGCTTGCAGAGGACCAGAGTCTGAGAGGCAGTTCGGCTCCCGCTGCTTCTACTCTGCCCACTCCCCTCAGGACAGAGCCTTGGCATGGTGGAAACAGGATCATTGTCCCCTATCACCGTAGGACAGAGGCGGAAGAACAGCTGCTGAAGGACTACAAACCCCCTCGGCTGAACCCAACCTTTAACCCCGCAGCTGAAAGTGATGTTCCCTTGACCCGGAAGAACTACAGGGAAAGGATGCACAGCTTCCTGTATAAAGAGGAGCTGGCACAAGAAGAGGTGCTGTCCAGGCTCGGCCTGCAGAGTGCCATTGTCTCGTTGTCTGACACCATCACTACTTCTCGGTTTGAGATGAAGGTCGCCCCATTTGGAAAGCTCTATGCATCTGTCCCACTATCCTACAACCTGACTCCTCACACTCCAGAGGGTCAGATGATCAGGACAGCCGTTGGCTCCGCCCTTGTGTCCCCTTCTTCCTCTGCCAAAAAGCAGGTGTATGAGGCGCTGGTGGTCCTGGAGGCCAGCACCGAGGACATGATCTTCCTACTGCTCTCCAGGGTTTGCTGCTCTAGCCTGGGCCTTCAGAAGGGCACCCACCTCCCCATGGACATCCAGTTCCAGCTAAACCGGCAGCCGTTCTATGAGTGGCACCAGGCAATCGACCTCCTGCCAGATGTGGAGTGGGTCCTGCCAGATCTTATCCGAGGCAGCGTCCCAGAGTACACTGGGAAATTCCTCAATCACAATCTTAACACCAAGCAGAGGGCTGCCGTGGCCCTGATCATCGGGGAAGCCAGTGAACAACTGTCAACAGCCCCTCTGCTAATTTATGGGCCCTTCGGGACGGGGAAAACGTTTACCCTAGCAACAGCCGTTATGGAACTTCTCCGACAGCCCtgcaccagagtcctgatctgcACCCTCACAAACAGTTCTGCAGATCTGTATGTGAAAGATCACTTCCATCAGTACGTGCAGCGTGGACACCCAGAGGCCCGTCCACTCAGAATAAAGGCCAATAAAAAAGGTCTTGCTATAATAAACACTGACAACATCACTCGAAGCTACTGTCTTGTCTCCCGCGACAATGACTCCTTCCTGTTTCCTGAGAGATCCGACCTGGACTCACACCGAGTGGTGATTACCACCGCCCCAATGGCACGGCACCTCCACGACCTGAAGCTCCCAGCTGACTACTTCACCCACATCATGATTGACGAGGCCTCCCAGATGCTGGAGTGTGCTGCACTGATTCCCTTGACCCTGGCTGGGTCGGGGACAAGGGTGGTCCTAGCTGGGGACCACATGCAGATAGGGCCGAAGCTGTTTTCGATAGCGGAGGGCAGTAGCAGCTCTGATCACACCCTGCTCAACCGCCTCTTCCACTATTACCAGGGACAGAAGGGTGAAGCAGCCTCCAGGAGCAGGGTCATCTTCAGTGAAAATTATCGCTGCACCGAGGAGATTGTGAAATTCATCGCCACCCACTTTTACATTGGAAAGATTGATGCCAGGAAAGATGATGTCATAAAGGCCAGTGGCAAGGTTCCCCCTCACCCTCGGTTCCACCCGCTGAGGTTCCACCACGTTCGTGGGACTTGCTCCTGGGACAAGGTGTCTTTGTCTTGGTACAATGTCGAGGAGGCCACAAGTGTGGCAGAGACAGTGGAGGAACTAATCAAAGAATGGCCACCTGAATGGGGCAATCGAAAGCAGTTCAGAGCCATTCTGATGACGGCAGTCCACACTCGAGACATCCTGCTCTCCTATGACTCCGCATACCCGGAACTCTTTGGAGACACACGTGTGCTGAACACAGCTATGACAAGAGCACAGTCCCAGGTAGTTGCCATTGGCGATGCCCCAGCTCTGTGCTACTTTGGGAAGTGCTCGAAAATCTGGAAGAGCTACATTAAGCAATGCATTGACAAGGGGAGTGCCAGTCCACAGCACATCACCATGAACCGCATTGAGCAAGAAGTAAAGGAAATCTCCAAGTTCCATAAAACAGAGGATTGTTACAACAGGGATGGTGAGTCTTCTGAGTCAGACGTAAACAAAATTGAGGACCCCATTCTTCAGGAACTTCTAGATGAAGGTAAGGATGTTCAAGTGACCATCACAAAAGAAGGACTATTGGAGATTATCCAAAATGCTCTCTCTGGTGAAAAAACGGTTGGTGAAGACTGGAGTGACATAAACACTGAGCTATTGTTGAGGACAAGGCCTAATGACATCAAGCGCTGTAAGCTCATTAAGGAGAAGTTTGACTCAGGGTATGCTATACCCCTAGACCAGCCAACACTTCGCATTAGCATTACAGGAAAAGAAAATATTGGCAGGTCTTTTCCAGGAGATGTGGCTGCTGTGGAAATCTTGAGTGATGATGAGAGCTCTTGTAATGGTAAAGTGGTGGGGGTCCTGAAGGGGGAATCCCAATCCACATTTGTCTGTGCTATTGACAATCACGATCCCCAGGTGATGAAACCCATCAACAAGGGTGCCTCCAACATTTTCACACCCTCTGCCAAGAACAAGCCCAACTGTGTTGCAGTACGGAAGAAAGAAAAAGGATGCTGGATCCCAGATAGGTATATCAAGATCGACGAGGAATCAAGGCAAAACAACCTTTTTGTTGTTGAAGTCTTGAAATGGGTCAAGCCTTGCCGGTATCCCCTAGGAGTTGTTACAAAGGTCCTTCCAAAAGCAGCATCTGAAGAATGTGGACTTGAAATGTTGGACATAAAATACCAATTGACAAAAGTCCCTCCTAAATATACCAAAGGAGACTTAAAAGTTAGTTTAAAAAACAGAAAGGATTTCCGGAGTTATAACACCTTCACCGTTGATCATTGCAAATCACAGGACCTCGATGATGCAATCAGCGTGAGAGATTTGGGAGATCACTATGAAATTGGTGTTCACATTACAGACGTTGCAAGCTATGTGACTAAGGGCAGTAAAATAGACAAATACGCAGAAAACCAAGGAAATGTGCTCTACCGACTAAGTGAAAAACCAGCGTTCTTGTTTCCAGAAAAGCTGAGAGAAGGCTACTTGAGCCTGCTCCCTGGGTGTGAGCGTCATGCCATATCACTGAGAGTGGTCATTGAAAAGGAAAGCAACAGAATTAAGGAAAAACCCACCTTTGACCTCTCCCTGATTAAGTCAAAGAGAAGGATGACGTACGAGGAAGCAGAGGAAATCATCCGAAAGCATTATGTGAACCATGGACATCAACTAAAGTTTGACACTTTGGAGGATTGCCTTGCTGTGTCATACTACTTTTCTGAGGTCCACAAGCAGCACAGAGTGTCTGGCAACTGCCACCATGTGCAGTCTGATGAAGACGCTCACCAAGGCAGAGGGATGTCCCATGACATGGTAAAGGAGCTCATGATCATGTATAACAGTTTTGTGTCTGACTTCTTGATTAAGAAGGAGAAGACAAAAAGACTCACCCCTCTGAAATGTCAAGATTGTCCTGATCCAAAGGACGTGTGCCAGTTTTTGACCAGACACAGTACCCTCATGCCATTCTCTGCTCATCTCTCAATCCTTCAAGATGAGAATGCGGATCTCGACAATGACGACGCCGAGGGCCTATCAGCAGATGAACAAATGTTAAACAGGCCCACAAATGGCCCTGAGAGTTTTAGAGAGTTCAGCGTGTTCACATCCTTGCTTAAGAGACTTGAGGTCGCAGCTCAAAACAGGGACTTTCACACGTTAGTTTACCTTATCACAGCTGACGACATCCACCCACAGCTCCAACCTGTGGCAGCTGAATTTAGGAAACTCCTCCGGAAGGGCTACATCCACCGCTCCAACTCCACGTCCCAGTCCAAGGTCGGTCACCACGACTTGCAGCTCGACTCCTACACCGGGGCCTCCTCTCCAATGCGCCGATACTTGGACGTCATTGTGCAGAGGTTGCTGCACTCTGCACTTGAGGAAAGTGGACCCAGAGTCAGGTACACTTCTAAAGAGATTGATCTGTTCTGTGCCCTCTACATGGAAAAGTGCAGCATGACGGCTGAATTTGACAAGGATGTACAGAACCTTAAGACAGTTATCTCTTTGAGCCATCAGAGTGCACAAATGATGGCTGTTGTGAATGACTTGCATCACAGGGGAGACAACTTCCAGGTATCCTTTCCTCTAAACCAAGTCTCACTGTCACAAATGATCTCCATAAAGTACAAGGACCTCAAACTAATAGACCAGCCAGAGTACAACAGAGAAAGCCATTCCATGATACTAAAATGGAAGCGAAGGGTGTACTCATTCACAAATTCCCACATATGCTCTGAACTTAAAGGGGCCCAGCTAAATCCCCACATAACCCCTGTTCTGACAGATACATGGAAGTGTATTGTTTCAGCTATCAGGGCAGAGGATTGGGAGAAAGTTCTCCAACGTGTTCAGGAAATCAAGCCAAGAGACTTGAAGAAGGGAAAATGCAGACCTCCTGATTTTGAACACTACACTGAACTCTCTCTGGAGCTGAAAGTTGGACAGAGTTTCCCAGTACAGCTGGGCACAGACACAAGCTGTGGTCAGACTTTCCCTGCAGTACAGCTGGTAAACGTCCATCCACAGTTCGATATTTGCCTGCAGCATTCAAAGGACCCGATCTTATGCTTTTCCAAACCAGTACTCCAGGCATCAAAGCAAGATTACAGCAGGTACAAGGAGTACCAAGGAATCTGGGGGCCACTTTGTGCAATGGACACAGCTTACAATGCCGTTGCAGAAAATGACAGCATTGTCCTTGAAGGTGTGAAAATCACATGGAAGGATAAAAAAAACCTTGAAGGTTACTTTGACCTGCCTGTAGAGCAGAAAAAGCAGTGGTCAATAGAATTTGACATTAAGAACTGCTTCCTTTGCATTAGACTGAGGGGCCAAATGGGAAATGAGACAGAAGGATTGGATCTTTTTGGGATTTCCCCACTCTTGGACTTGGAGGACCCCCAGTTTACATGGGTGGCTCATGGCGTAACCAAGAAAACCAAACGGCTTTTGCACACTCAAATTAACTTTAGCCTGAACCACCTCTCCATGGAGAACACCCCAAGCACCGTCTTCTCTGAGAATACAGTGTTCACGGTGGAACTGCTCCCAAAAAAACTACCTCATGTGTAA

Transcript

SKAU_T00389350

Protein

SKAU_T00389350

MSMAGHGTQGSVLSPLLQTHELRVACTSCYEQPLDVTSSAVHVSHFCSRNILLVRRRGGREADWRHVSPRPKYRSPQKYVKCLYTGEGGSCLQYGKRCTFAKSHEEADVWNFLKSRGLENSFLIRLVWKAQSGEDEEEELGVAERIQSLSNGHFVHLCHACFHGSPRKITPERSAKVCGHPPEPALVLIQVSRCQGEKVTFSAIRPLPPGRPIQQFRHCWHVERGAPCQAECTFPHSEAEMAVWTAERNEGLDRNQLVTELDELEGQESLEEPRPRFSCAVCQLQFSSQDGFISHCSSLAHERRYCDDDDTPAEWKHRRPPDHSQALELCKRPETCEYGENCTAAHSTEELQEWCLRMRMIRRKRKAAQEQGLLSYRDQLLMEYRDSLNEVLIRPLKAAALLKQEPGATFTLGDRTDRDPCTYSDGSLFCTLGKSHSLSVSFSSTCPGHYEQWLALDFDTRPVLLRKIRVGVGEEQSFPELAEDQSLRGSSAPAASTLPTPLRTEPWHGGNRIIVPYHRRTEAEEQLLKDYKPPRLNPTFNPAAESDVPLTRKNYRERMHSFLYKEELAQEEVLSRLGLQSAIVSLSDTITTSRFEMKVAPFGKLYASVPLSYNLTPHTPEGQMIRTAVGSALVSPSSSAKKQVYEALVVLEASTEDMIFLLLSRVCCSSLGLQKGTHLPMDIQFQLNRQPFYEWHQAIDLLPDVEWVLPDLIRGSVPEYTGKFLNHNLNTKQRAAVALIIGEASEQLSTAPLLIYGPFGTGKTFTLATAVMELLRQPCTRVLICTLTNSSADLYVKDHFHQYVQRGHPEARPLRIKANKKGLAIINTDNITRSYCLVSRDNDSFLFPERSDLDSHRVVITTAPMARHLHDLKLPADYFTHIMIDEASQMLECAALIPLTLAGSGTRVVLAGDHMQIGPKLFSIAEGSSSSDHTLLNRLFHYYQGQKGEAASRSRVIFSENYRCTEEIVKFIATHFYIGKIDARKDDVIKASGKVPPHPRFHPLRFHHVRGTCSWDKVSLSWYNVEEATSVAETVEELIKEWPPEWGNRKQFRAILMTAVHTRDILLSYDSAYPELFGDTRVLNTAMTRAQSQVVAIGDAPALCYFGKCSKIWKSYIKQCIDKGSASPQHITMNRIEQEVKEISKFHKTEDCYNRDGESSESDVNKIEDPILQELLDEGKDVQVTITKEGLLEIIQNALSGEKTVGEDWSDINTELLLRTRPNDIKRCKLIKEKFDSGYAIPLDQPTLRISITGKENIGRSFPGDVAAVEILSDDESSCNGKVVGVLKGESQSTFVCAIDNHDPQVMKPINKGASNIFTPSAKNKPNCVAVRKKEKGCWIPDRYIKIDEESRQNNLFVVEVLKWVKPCRYPLGVVTKVLPKAASEECGLEMLDIKYQLTKVPPKYTKGDLKVSLKNRKDFRSYNTFTVDHCKSQDLDDAISVRDLGDHYEIGVHITDVASYVTKGSKIDKYAENQGNVLYRLSEKPAFLFPEKLREGYLSLLPGCERHAISLRVVIEKESNRIKEKPTFDLSLIKSKRRMTYEEAEEIIRKHYVNHGHQLKFDTLEDCLAVSYYFSEVHKQHRVSGNCHHVQSDEDAHQGRGMSHDMVKELMIMYNSFVSDFLIKKEKTKRLTPLKCQDCPDPKDVCQFLTRHSTLMPFSAHLSILQDENADLDNDDAEGLSADEQMLNRPTNGPESFREFSVFTSLLKRLEVAAQNRDFHTLVYLITADDIHPQLQPVAAEFRKLLRKGYIHRSNSTSQSKVGHHDLQLDSYTGASSPMRRYLDVIVQRLLHSALEESGPRVRYTSKEIDLFCALYMEKCSMTAEFDKDVQNLKTVISLSHQSAQMMAVVNDLHHRGDNFQVSFPLNQVSLSQMISIKYKDLKLIDQPEYNRESHSMILKWKRRVYSFTNSHICSELKGAQLNPHITPVLTDTWKCIVSAIRAEDWEKVLQRVQEIKPRDLKKGKCRPPDFEHYTELSLELKVGQSFPVQLGTDTSCGQTFPAVQLVNVHPQFDICLQHSKDPILCFSKPVLQASKQDYSRYKEYQGIWGPLCAMDTAYNAVAENDSIVLEGVKITWKDKKNLEGYFDLPVEQKKQWSIEFDIKNCFLCIRLRGQMGNETEGLDLFGISPLLDLEDPQFTWVAHGVTKKTKRLLHTQINFSLNHLSMENTPSTVFSENTVFTVELLPKKLPHV

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00773	RNB	RNB domain	Domain	Interproscan
PF13086	AAA_11	AAA domain	Domain	Interproscan
PF13087	AAA_12	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001900	Domain	Ribonuclease II/R	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039691	Family	Zinc finger CCCH domain-containing protein A/B	Interproscan
IPR041677	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR041679	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR047187	Domain	Upf1-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14928	MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0004540	Molecular Function	RNA nuclease activity	Interproscan
GO:0035196	Biological Process	miRNA processing	Interproscan
GO:0035198	Molecular Function	miRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-