Gene detail

Detailed information of SKAU_T00389190 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00389190	HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBER	CM056395.1	7907880	7922730	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00389190

ATCAGCCCAACAGCTAGCGGTATGTTCCGTGCTGCTTGCGCATGCGCTATGGCGTGCTGTTCCTGTAAAGCTTCCACGTCTGAGCGCGAGTGTACATTAGCCAATCACAGGCGGCCACACTGTGTTTGGAAACAACCCTCCCTACGATTTATATCACCCATCCAAAACTTCCTCTTTCACATCTGACAGGCTCTAAACTTTCTTCTGTCAAGCGTTAATTCGGGTGGTGTTTGCAAAATATTGCGAATCGTCTGACGTGTTACAACAAGCAAGTAGATCGGCTAAGTGCTACATTGcgggtgtcttttttttttttatgtttgtgtaAATTTTCTTACAGTATATCAAGTACCGGTTCTGTTGATATTCGTCTTTTTGGGGTAGATAACTCGCCAGATttgagttatttatttttttttgtaaagggaGGAAGCGTAAAAATACATTTGCCAAAAAAATGGACAACCCGAGTAGTTCTCCGGAACAAAGGACGCTTACACTTGTGGTTAAAACGCCTAATCAAGCCTACCCTGATCAGATCATCAAAGGTATTGATATAAACTGGACAGTGAAGGACTTGAAGAAGCACTTGTTCCAAGTATACCCGAATAACCCGCTCGAGAAGGACCAGAGAATTATCTACTCAGGCAAGCTGCTCCTGGACCATCTGCCAATCCGAGATGCCTTTAGAAGGTCGGACCCAACGCCCACTGTTCACCTGGTCTGCACATTCAGGGGTCTGCCCATGGATCAGCTGGGAGCCCAGCCCAAGGTGACAGCAGCAGAGCAGCGGAGGGAGTCTCCCTCGCCCTTGCCCCAAACAGAAGGGCTGAGGCACAGGGGGCACCCCACCGGCCCGACACCCCCATGGACCAGTGCCACAGCGCCCACTCCGGCGCAGATGACCCACCCGACGTTCCCCACTTACTCCCTGTACAGCCCCCAGCAGCTGCTCTGGCTACAGCAGATGTACGCCCGGCAGTACTACATGCATTACCAGGCGGCCATGGCAGCCGCTGCCTCCGCCCCTGTCACCCCTGCCCCCGCCACCGCCCCCCACGCCGCTGCCCTGCCCAATCAGGCGCCCATTGACAACCTGCAAGCCAATCAGAATGCTGCCGACCCCCAGTTCATCAACCCGGGCGGGGCCAACCCTAACATGCGGATGAACGCACAGGGTGGGCCGGTGATGGAGGACGAGGAGGATGCCGATCGCGATTGGCTAGACTGGGCGTACACGGCGGCGCGTTTCTCAGTATTCCTCAGCATCGTGTACTTCTACTCCACGATCAGCCGCTTTATCCTGGTCATGAGCAGCCTGCTCTTCATGTACCTGCACACGGCTGGCTGGTTCCCCTTTCGGCGGAGGCCCGTTGTCCCAGTTCCAAATGAACAAGCCCCAGAGGTCATCCAGAACCACCAGAACCAAAACAGGAACCCAGAGCCGGAGGATGTCCCAATTGGAAGAGACAATGATAATGTAGATGAGGATGCAGAAGAAGAGGGCGGGGTAGAGCAGGAAGGGGCGGTACAGGGAGAGGCCATTCCCCTGAACGCCGTGCTGGTTCCCCCCCACAGAGTGTCTCTGGCCTGGACCGCGTGGGTCTTCTTCAAGGCCTTTTTCGCCTCCCTGATCCCCGACATCCGACAGGGCATGGCCAACTGAACGCCGGCAGTGCCACGGCACGATGACATCACTATGTGGGCGGGGCCATGCCTCATGGGGGTGCAGAGTTTATGCGGTCGGAGAACGTTCTTGGACGTCCTGAGGAGGAGGCAGATCTGCGTTCTCTTCTGTCGTGTTCACTCTGAGGGAGGAGCTGTGTGACACGCCCATTTACGTATAAACATTCCTGTGCCCTGACAAAGGACAGTAGTCAATCGAGCTGTGTTTCCCCCGGTAACGGTGGTCACTGAAGCGCCGTCCTTCTTCTCCAGAACTTGTGCGGGTGTGTAATGGAGACACGTAAATTGTGTTTGTAACTCAAGGGCAAGACTTTGTATACAGTAGGGttcctgtttcaattttattaTGCAAGCTTCTCATGACGGTTTTCTAAACTTGGGGGCGGGGGCTTATCCACCCTCCTACCTAAATGCAGCTGCTTTCCTCTTCCTGCGTTTTGATTGGACTTCGTCTAAATGGCTCCAGCTGAGGTGTCAGTGCAgcgagcgtgagtgtgtgtgcgcacgtgtgcctGCTGGTGTGAGAGAGCGTGAATGCCGGTGCCATGGTGGGgtattatgtgtgtttgtgtgtgtagggggaAGATTGGGGTATGCATCCCAGTCAGAGAGGACCATGCAGTGTTGTGAGAAGGAGGGGTAGAGACTGGGCGGGAGAGAGAGGACTCGTTTGGCTCTCTCGCATTGCCTTTCCCTTTCTCAGCTGAAGGTGCAAAAAGAGGTTTCCTTTAATCAAGTCTCTTGTGACCTACAATTAATTTGAAGTAATAATTCTCAGCATTGTGGATATTAATCCTTCACATGCACATGATAAACATAGTTTAATATTAATGGTCTCACTTGTTATCAACATTAAGTAGTCTATACAATACTAATCCCATTTGGGATAGCTCCTTTTAACGGTACGCACATACACTGAGTGTAGTTTTATTATCTCTGCCAATTAAATCTATCTGTTAATATATTTCAATGCTTTCATTGTAAAGACCAGCTCTGTTATTGATGCTGTTAAGAAAATATCTGAAATTAACCTGTATTTGCGTGAAGGTTTATTAAATAAATCTATTTAT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR039751	Family	Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 /2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12943	HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0032469	Biological Process	endoplasmic reticulum calcium ion homeostasis	Interproscan
GO:0044325	Molecular Function	transmembrane transporter binding	Interproscan
GO:1902236	Biological Process	negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway	Interproscan
GO:1903069	Biological Process	obsolete regulation of ER-associated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-