Gene detail

Detailed information of SKAU_T00383110 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00383110	ALANINE AMINOTRANSFERASE	CM056394.1	20518257	20570023	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00383110

ATGGTGTCTGCAAAATCAGTGCTCCTCTGCGCGGCTATCCTCTCAGGCATAGCTTTGGTGTCTCATGGGGCTAGCGTGGGATCGTATATGGATTACTGTCCTCCTGGGTGGACCGAATTTAATGAGCGCTGCTTTAAGTTCATCAGCGGGAGCACAAACTGGGCTGATGCTGAGataAACTGTGAGAATATTGGGGGAAACCTGGCATCAGTCCACAGTGAAGAAGAATACGCTTTCATCAGGCAACTGGTTAAGCAACATGACTCCAGTGAGCCCACCTTCTGGTTGGGATTGTCAGACCATTACAAgGAGGATACATGGCTGTGGTCTGATGGCACTAGAGTGGACTTCACTTTGTGGAACCCAGGGGAGCCAAACAATGTGGGTCTGACGGACGCTTTAGAAGGGAACTACAAGATGTCTCATGGGGCTAGCGTGGGATCGTATATGGATTACTGTCCTCCTGGGTGGACCGAATTTAATGAGCGCTGCTTTAAGTTCATCAGCGGGAGCACAAACTGGGCTGATGCTGAGataAACTGTCAGAATATTGGGGGAAACCTGGCATCAGTCCACAGTGAAGAAGAATACGCTTTCATCAGGCAACTGGTTAAGCAACATGACTCCAGTCAGCCCACCTTCTGGTTGGGATTGTCAGACCATTACAAgGAGGGTACATGGCTGTGGTCTGATGGCTCTAGAGTGGACTTCACTTTGTGGAACCCAGGGGAGCCAAACAATGTGGGACTGACGGACGCTTTACTAGGGAACTACCAGACGAAACAGTCTCTTAAAAAGGAGATTCGGTCTGTGGTGTGGGATAGGCTAGTGGAGCTGGGTATCTTTGTCCTGCCTGATGTCCAACCTGAGCTGGAGCAGGGTGGTGCAGCTTCCTCTGAATCTCCTCTGatagaggagaaggaggagaggccGCAGCCGGTTACTCTGTCGAGGTTTGAAAGTCTCTCGCCGGCCTTGTATGAGTCAGTGGTAGGGGCGAGGTTGAAAATTTGTTTGGCCAACCTGCACCTAGAACAAGAAGCCAATGAGAGACAGGAAGCCCGAGAGGCAAAGGAAAGGGCTCAGAAACGTGCGTATGCAGAAGCGTGTGGTATCCCTCACGTGCAGCGTAGTGTGTCAGATTTTATCTCGCGACGGGACGGGGGCATACCTTCAAACCCTGACAACATCTTCATCTGCAACGGCTCTCAGTCAGCACTAATGGTTATTTTGAAGCTTTTGTCCTGTGGGAGAGGGCTGTCCCAAACAGGCATTCTGGGCCCAGTGCCCACCAACAACTATTTCAATATGATGCTGGCGACAGCAGGGTCAGTGTTGGTGCCCTATCATCTCTTTGAGGAGGAAGGCTGGGCTCTGAAAGTAGAAGAGCTGTGCAGAGTCCTCGGAACCAGTAGGAGTCACGGTCGCCCCAGAGCTCTGTATGTCATAAATCCTGGAAATCCCACAGGACATGTTCAGAGCAGAGAGTCGATTGAAGAGGTGATCCGGTTTGCTACTGAAGAGAGGCTCTTCCTGTTAGCTGATGAGGTGTACCAGGACAATATGCACACAGAGGACTGTGAGTTCATCTCCTATAAGAAGGTGCTGTTTGAGATGGGGCCAAAGTACTCTGACACATTGGAGATGGCTTCCTTTCACTCAATTTCCAAGGGCCCCATGGGAGAGTGTGGACTGCGTGGAGGTTACATGGAACTTGTGAACATCGACCCGGCCATCATCAATGTGATACGCACACTCCTCTCCGCATTAGGGTGCTCTTCCCTGATAGGTCAGATCGCTCTGGACATCATGGCTGACCCCCCACAGGAAGGGGATCCCTCATACCCCACATATTCGAAGGAAATCCGGTACAGTCGGGAGACCCTGGCCTGGAACGTTCGTCTGGCCCACGATGTCCTGGGGGGTCTACCGGGGGTGAGATGCCAGCCGGTGATGGGGGGTACATACGTCTACCCCTGTCTGCACCTCCCCTCAGGAGCGGTGGAGCAGGCCAAGgtggCCGGGATGGAGGCCGACCAACTATACTGCAGCAGGCTGCTGAAGGAGGCAGACCTATGCGTCAATCCAGGGTGTGAGTACGGGCAACGGGAAGGCACCCACCACCTCAGGATAGGCGTGCTGACTCCCACGGAGAACCTGGAGGAGCTGCTCAGACGATTCAAGGCCTTCCACCTCAGATTCCTGGCCGAGTTCTCCTGA

Transcript

SKAU_T00383110

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304	Domain	C-type lectin-like	Interproscan
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR045088	Family	Aminotransferase ALAT1/2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11751	ALANINE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004021	Molecular Function	L-alanine:2-oxoglutarate aminotransferase activity	Interproscan
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-