Gene detail

Detailed information of SKAU_T00382680 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00382680	HL01030P-RELATED	CM056394.1	19202928	19216817	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00382680

Transcript

SKAU_T00382680

ATGTTCCTGCGTCCCTCCCCCACGCCTCCGCACAACAACCAGGAGGAGCTCAGGGGACAGGAGCACTGTGATGACCGGGACACGCCCGACAGCTTCGTCCCCTCCTCGTCCCCGGAGAGCGTGGTCGGCATGGAGATCAGCCGCTACCCCGACCTGTCCCTGGTGAAGGCGgagcccccctcccccgccccttcCCCAGTCATTCCTATGCTGCCGAGCTCCATTGGGAAAGGTTCTGAGGTCAGGCAGCGGGATGTAAAGATGGAGCCCCCGAACACCTTCTTCGGGTCGCAGTTCGGACACGCCCCCAACGGCTCAAAGACGGGGCTGGTCTCCATAGCGATCACCCTGAATCCGGCTGCTGCCGAGAACATCAACGGAGTAATGGCCGCCATGGCTGACCTCCTGTACATGAAGACCCCCTGCAACTACGAGGTCACCAACGCTCCGGACCGCGGCCCACCGGCACCCATGTTCCGGGGCCCTGGGGTTGGCCCGCAGGGCATGGTGAGGTTCATGAGGCCCGCCGGACCCCCAGGGACCCTCCACTTCCCTCCCGTCAGCACCGgTCCAGCCATGGTCAGGGGCGATCACCCGACCGGACCCAGACCACAGTGGTGTTGTCACTGCAAAGTGGTGGTTCTGGGTAATGGAGTTCGTAAACCCATCAAAGACTTGCGCTGCAACAAAACGGATTCGTCACAGGTCCAAGGGAGGTCCGAGGGGGACATGGTTTTCTGTAGCCACAACTGCCTTGTCCTTCACTCGTCTGCCACGCAGTCAAAGACTCCGGACAAAAAGGAAGTGGTTGCCCTTCTCCCCTCCTCCACATTCAAAGAGAACCCTTCTAAAGCCCTGCACCAGTACAGCAACAACATGTCCGCCTTAGATGTGCACTCCCTCTCCCAGCTTCAGCCCAAGCCCTCgcctccctccaccccacccattgccttcccgTCGGCCGCCTTCGAGACCGGCAAGGCGGAGGCCAAGCCGGACGCCCTGAAGGTGACGGTCAAGCTGAAGCCCCGCCCTCGGGCGGTCCACAACGCAGACGAGGGCCGCCCCCACGGGAAGAAGTGGAAGGGCCTGCGTTGGAGGAAGTGGAGCGTCCAGATCGTGCGCAAGTGCTGCTTCTGCCACGAGGAGGGCGACGGGGTCACCGACGGCCCCGCCCGCCTCCTCAACCTGGACCTGGACCTGTGGGTGCACCTCAACTGCGCACTGTGGTCCACCGAGGTGTACGAGACCCAGGCGGGGGCCCTCATCAACGTGGAGCTGGCCCTGAGGCGGGGCCTGACGGTCCGCTGCACCTACTGCCAGCGCATGGGCGCCACCAGCGGCTGCCACCGCCTGCGCTGCGCTAACGTCTACCACTTCACCTGCGCCCTCCGCGCCCAGTGCACCTTCTTCAAAGACAAGACCATGCTGTGCCACCAGCACCGGCCGCGGGGGGGCGCCCAGGGGCAGGAGCTGCGCTACTTCGCCGTGTTCCGCCGCGTCTACGTGCAGCGCGATGAGGTGCGGCAGCTGGCCAGCGTGGTGCGCCGGCCCGAGCGCGACCACACCTTCCGCGTGGGCAGCCTGATCTTCCACGCCGTGGGCCAGCTCGTGCCGGAGCAGATGCCCGCCTTCCACGGGCCCACCGCCATCTTCCCCGCCGGCTACGAGGCCAGCCGCATCTACTGGAGCATGCGCCACGGGAACCGCCGCTGCCGCTACCTCTGCTCCATCGACGAGAGGGACGACCTGCCCGAGTTCTCCATCCGCGTGCTGGAGCAGGGCTACGAGGACGTGTTATTCACCGACTCCACCCCCAAAGGAGTCTGGGATAAGGTTCTGGGGCCAGTGGCCGAGCGGAAGAGTGAGTCGGGAACGCTGAAACTCTTCCCGATCTACCTGAAAGGAGAGGATCTGTTTGGGCTCACGGTCTCCGCAGTCACCAGGATAGCAGAATCGCTTCCGGGGGTGGAGGCCTGCGAGAACTACACCTTCCGCTACGGCCGCAACCCTCTGATGGAGCTGCCGCTCGCCGTCAACCCCACCGGCTCCGCCCGCTCCCAGCCCAAGACCAGATCCCCCGTCAAGAGGTTTGTGTTGAGGCCCCGAACCCTGACCAGCTCCGGCTCCACCAGGTCCCCCCAGAACGCGTCCGGCGGGGAGCTGGGGACCCCCTACAGCAAGCAGTTCGTCCACTCCAAGTCGTCCCAGTACCGAAGGCTGAAGAGCGAGTGGAAGACCAACGTGTTCCTGGCCCGCTCGCGTATCCAGGGGCTGGGGCTTTACGCCGCCAGAGACATTGAGAAGTACACCATGGTGATTGAGTACATCGGGACTGTCATACGCAATGAAGTGGCAAACAGGAAGGAGAAGATGTACGAATCTCAGAATCGCAGTGCGTATATGTTCCGCGTGGACAGCGAGCACGTCATCGACGCAACCCTCACAGGAGGACCAGCGAGGTATATCAACCATTCTTGTGCACCAAATTGTGTAGCCGAGGTCGTGACATTTGAGCGAGGCCACAGGATCATCATCACTTCAAATCGCAAAATTCAAAAAGGAGAGGAGCTGTGCTACGACTACAAGTTTGACCTTGAAGACGACCAGCATAAGTTCCCATGCCACTGTGGGGCAGTCAACTGCCGAAAATGGATGAATTAAAAAACgaagagagaccgagagagagaaagaaagattgaAACGGAGGACACATGCATTCCTTGACATCAAAGTAACAGGAGAAGCTTGTTTCTGAGGGAGGGGGAAGCTCTTGGGAGCGGGAGGGATGCTGGCGTGCTATAAGACGGCTCAGGTTTTGCCCAGGGCTCAGCAGGGCACAGTGGCAGAGCCGGACGACAGATGTGGACGAAGGCCAAAATGCCACCCGACTGTCACTTCCGTTGTTTCGTAGAGCCGCACTAGAATGACTCTCTCTTTTTCCTGAACTTGGAAGGAAAAAGGCGATCGGCTGGCCGTGTGACGCGTGTGCGAATGAAACGAGGCGGGCCGAATTCACCAGCGAATGAGGGGAGAGTGCACCGTGCTGGTCACCGCCTTACTAGAAAATTATAGGGCAGGCCCTCTAttatgaaaaggcaaatgtatacatACACAGTTATAAATTGAATAAACGTAGACATCACTGAACGGGGAATGTATGGAAACAACTTCCTTAGGGATGCAGCTAAGGGAAAAATTAACTTGcactaaaaaacaaaaacaacaaaaaacaaaaaaaaaagacaaaaacaaaaaaactcaaaaaaaaatttaaaaacaaaaaaatttaaatacttgaTTCCATGAGTCAGTttattgtagttttattttttccttgttttGATTTCTGTAAAATAAGAGGaacatttttgtatttattgaatAAGTGAATGAAGCTATTTTTAAGATGATGTGGAAAGAAGGCTGAATTGCTGCTGTTGCCTGCGGATTGGACAGATCCAGTCACATGTACAAAGTGTAAATATCCGAAGCCACCGTCTAAATGAAATAGTAATAATTGACCAAATGCTACCTTAACTTCATGGCTGTttgggtgattttttttttgtttgtttgtttttgtttcaacaaaaaattatttaataaggaTGTCATGATATCATTCTgagagtatatactgtataaatattcTGTACAGAATGTGTAAGATAATTACAATAATTcacaaaaaagtatttttgttgtattgagAATATAGTATGGTTTTCgtgatttaaaaatgtattctgaccacttgaaaaaatataattttgtgtttTCTTGACTTTCTTTTGATCTCTTTTTGTTCTCTAATGAATTAATTGGTGGGGTGCAGGTGAAGGTGATTTTGACATCCTTACTGTAAATCAGGTTTGACTTTAGAGCGAGTGGTAACTGTGAATTTAGGTTTTAAAGCACCCAAACTGAATTAGTTTGCTTCTTTCTAACTTGATAGGCACAACTAGACCCTTCTTTAATATTCGTTTTGTGCAGACTTAGTACTGTGACTTTGATAAGAGCCACAGTCATTCAAAGAACTGTTTTGCCTTTTACAAGTTACAGGAGTTTCGAATTTGCGTTAAATtactgaaaaatgaaaaaaaaaaaaaaaaaaaaactggttttgTTTACATTTTCTTGCGAGAGAAATAACTTTGGATAACGTTGGATGGCGGAGAAACATTTTGGAACCAGGATCATGTTTTTTGTACTGAAATTAATCTGGTACTGACACTTTGCAAACCGCAGTTTGAAATGAAGTTTCATTTGTGTGCACAAATTCAGTCGACTGTAAAACTTTTTGATTTATTCAGACAGTCTTGTATATGGCATGATGTATTTTTTCAACTTCTAAAAGAATCAAATTGtgtatatttttttcttgataaaATCGCTGTAATGAAATTGTTCCTTGGATATTTTTCTTGTACAATATTCCAACATCTTACCTTACGGTATTTCCCctgctttttttttcctttgtccTGTATAGTACAGTAGTATCTAATGTTTTAAAGAAATGAAGCCTTTTTGAAGTATCCAGAGTGCTATGGGGTTTGAGTTTGTGGAACCAGATTTAGGagcatttgcaaaaaaaataaaatattttacatcTTTATATTTGTGTAACT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856	SET	SET domain	Family	Interproscan
PF05964	FYRN	F/Y-rich N-terminus	Family	Interproscan
PF05965	FYRC	F/Y rich C-terminus	Family	Interproscan
PF13771	zf-HC5HC2H	PHD-like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214	Domain	SET domain	Interproscan
IPR003616	Domain	Post-SET domain	Interproscan
IPR003888	Conserved_site	FY-rich, N-terminal	Interproscan
IPR003889	Conserved_site	FY-rich, C-terminal	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR034732	Domain	Extended PHD (ePHD) domain	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45888	HL01030P-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0042800	Molecular Function	histone H3K4 methyltransferase activity	Interproscan
GO:0044666	Cellular Component	MLL3/4 complex	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-