Gene detail

Detailed information of SKAU_T00380970 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00380970	MYC PROTO-ONCOGENE	CM056394.1	14734534	14741333	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00380970

ATGGGGAAAAGGATAAGATTCCTCAGGGGCAGGTCAGGGGGGGGGCCACGCCCATGTCCTGGTCCTCCGCCACGATGGTCAGCCGCACGGCCGGCCCACCTGCCCCTGCCGATCAATCCCAAACCGCTCCCCCGTCACCCCACGCCCCTCCATTACCCCAGATCGTCAGCCAGCAAACCCACTACTTTTCATCGAATTGAAATTCCATTTATTGTTACTGAAACGGCAGTCATGCCGCTGAACTCGAATATGGCGAGTAAAAACTACGATTACGACTATGACTCGATCCAGCCCTACTTCTATTTCGACAACGAAGAGGATTTCTACCACCAGCAGCACAGCCAGCTTCAGCCGCCGGCTCCCAGCGAGGACATCTGGAAGAAATTCGAGCTGCTGCCCACGCCGCCCCTCTCCCCGAGCCGGCGACCCTCGCTCTCCAGCCTGTTCCCGTCCACTGCGGACCAGCTGGAGATGGTCACCGAGTTTCTCGGGGACGACGTGGTCAACCAGAGTTTCATATGCGATGCGGACTACTCCCAGTCGTTTTTAAAGTCGATCATTATTCAGGATTGCATGTGGAGCGGTTTCTCCGCTGCCGCCAAACTGGAGAAAGTGGTTTCTGAGAGGCTAGCTTCcctccaggctgcgagaaaggaCTCTTCGGCCAGCAGCTCCACGGACGGCAGCACAAGCCGGACGAGCCCCAACGTCAATTACCTCCAAGACCTCAACACCTCCGCGTCGGAATGCATTGACCCATCTGTTGTATTCCCTTACCCACTGACCGACAATCCGAAGATCAGCAAGACGACACCGCCCTCGGCTTTGGCATTGCCACTGGACACCCCACCTAACagtggcagcagcagtagcagcagtgatAGCGATTCAGATGACGacgaggatgatgatgatgaagacgacgacgaggaggaggaggaggaagaggaggaaattGATTGTGGTGACAGTGGAGAAGAGAAAAACGGCAAAGAGGTCTGACGCGACGGGAGTACCGAGCAGACAGCACCACAGTCCTCTGGTGCTGAAGAGATGCCACGTCCCGACTCAACAGCACAATTACGCCGCGCACCCGTCGACGAGGAACGAGCAGCCGGCGGTTGAAACGGATAAAGTTTGAGAGCAGCAGAGAGTACTCAAGCAGATCAGTAACAACCGAAAGTGCACGAGTCCACGGACTTCCGACTCTGAGGATAACGACAAACGGAGGACTCACAATGTGCTGGAGCGCCAGCGGAGAAACGAACTGAAATTGAGCTTCTTTGCGCTGAGGGACGAGATACCGGAGGTAGCGAACAATGAGAAAGCCGCCAAGGTCGTTATTCCTCAAAaaggcgacggagtgcatctacAGCATGCAGTCGGACGAACAGAGACTCATTTCTTTGAAAGAACAGTTTACGGAAGAAAAGCGAAACACCTGCAACAACGGCTGGAACAATTAAGGAACTGTCATGTATAAATTTTGTGGGTGGATATTTAAAGGCGTGTCATGCACAGATAAAGGACTGTTGCTGTGTATAGTTTTAATGTTGCATGCAAATGCAAGAGAAATACTCAAGATTTCATTAGAGGTGTTGACCACACAACCTTGTTTGGAATCAACATTGGTTTCAACAATGAAAACTGCCTCGAATTAGATTTATTTGTATTTAAgtcctttatttttattaataaaataattaaaaaggggCTGCACACTTACTGTCAGCCTTAACTTAAacattaatttgtttttatttgttttgtatgttttgtaTATAAATGATTGAAAATTTtgatcagaaatgtatttttgatgttaaTTATCTGAATTATCTGTGAATGTGTTAACAGAATGGGTGTGGGTTTTATCATATGTGTATGATTTCCCCTCGTGTTATGATTCAGAATCGTAAATACATTTCTTTATTAACCTTGTATTCGTTCAATTTGAATTTCTAGTAAGCCATCCGATTGCTTCATAAATGTGTTTTCCCTTCAGCCTTAAACATGTCGGCTGATGATCGTGTTCAGATGATCAGGTCAGGATGCAAGTTTGGgggacaccacacacacacacacatacactagcAGTTGTTCTCTTGAAATGGGAGATTTTGCAAAGTTTTTAAATGAAAACTTATTTGCAAAGAGACCTTTTCCCTTTGGTAAAGAAAAGTCCCCGCTCAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01056	Myc_N	Myc amino-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002418	Family	Transcription regulator Myc	Interproscan
IPR012682	Domain	Transcription regulator Myc, N-terminal	Interproscan
IPR050433	Family	Myc family transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45851	MYC PROTO-ONCOGENE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008284	Biological Process	positive regulation of cell population proliferation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-